PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0013500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 290aa    MW: 31730.1 Da    PI: 9.4105
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0013500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.6e-40140217178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cq+egC adl++ak+yhrrhkvCe+hska++++v+gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++
  Spipo16G0013500 140 RCQAEGCGADLARAKHYHRRHKVCEFHSKAAAAIVHGLTQRFCQQCSRFHVLSEFDQGKRSCRKRLAEHNRRRRKTHQ 217
                      6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-31136202IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.735138215IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.1E-37139218IPR004333Transcription factor, SBP-box
PfamPF031105.4E-30141214IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
LSRERERESM LECEWTNPGA MLLSPAEEGA AMDQPHHLRH PIFPFYDRGG LEFPCMFSQF  60
PSPAPPPPAT VVASPEDYSF HRYGLPLPPA AAVEPPAGPP MRIGLNLGVR TYFSSTPDGE  120
LMRLGSNVYR CDGGRCSAVR CQAEGCGADL ARAKHYHRRH KVCEFHSKAA AAIVHGLTQR  180
FCQQCSRFHV LSEFDQGKRS CRKRLAEHNR RRRKTHQPAA SLPPPPPPQQ PHHNTASAGN  240
FAAGRKGLSP SPFRAPLASA VLVEGARLIR CMSWSGSSTE GAPPGKFVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291412141184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919591.12e-57squamosa promoter-binding-like protein 8
RefseqXP_020085290.13e-57squamosa promoter-binding-like protein 8
TrEMBLA0A1D1XIM95e-77A0A1D1XIM9_9ARAE; Squamosa promoter-binding-like protein 8 (Fragment)
STRINGPOPTR_0002s14320.13e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-50squamosa promoter binding protein-like 8