PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0004700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 335aa    MW: 35741.1 Da    PI: 10.46
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0004700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037114135323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      C+ Cg++F ++  L++H +  H
  Spipo16G0004700 114 CGVCGRRFYNRVKLVNHFKQiH 135
                      *****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.928112140IPR007087Zinc finger, C2H2
PROSITE patternPS000280114135IPR007087Zinc finger, C2H2
PfamPF019369.7E-5188276IPR021139NYN domain, limkain-b1-type
CDDcd061673.47E-8188271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGAVAGFSAA LRCLLSRRRL LGDIGGAGVS CCSVARASLP PVAVFWDLDN KPPKGIPPYE  60
AAVRLKLAAS RFGPVRLAVA YADHHAFRRP PPPAGAPRGG EASGAVVPAE PHLCGVCGRR  120
FYNRVKLVNH FKQIHETENA KRLAQLDSAK GGRRVRLAAK LTVKMEKFRR AAREVLVPKM  180
NLGDGGGLAE ELRRAGVSVR RMPDRAEAAE RGALRAHMLA AMEQRKALGC LMLVSDDSGL  240
AGVLSEARTR GLKTVVVGDE GGEGALKRIA DVGFTWQEVA SGKAGKEAAT VIGRWKDRDL  300
LSRLEWTYRP QKEEGEEEGG GGGKREGDSL ETGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793801.11e-110uncharacterized protein LOC103710014
TrEMBLA0A2H3Y5P71e-108A0A2H3Y5P7_PHODC; uncharacterized protein LOC103710014
STRINGXP_008793801.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.12e-94C2H2 family protein