PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0001800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 353aa    MW: 38193 Da    PI: 8.3162
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0001800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-18156210256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Spipo16G0001800 156 RKKLRLSKEQSAVLEESFKEHNTLNPKQKMALAKQLNLRPRQVEVWFQNRRARTK 210
                      788899***********************************************98 PP
2HD-ZIP_I/II128.52.8e-41156245191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Spipo16G0001800 156 RKKLRLSKEQSAVLEESFKEHNTLNPKQKMALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-TL 245
                      69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.9E-202117IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.1E-19126213IPR009057Homeodomain-like
SuperFamilySSF466895.56E-19146213IPR009057Homeodomain-like
PROSITE profilePS5007117.491152212IPR001356Homeobox domain
SMARTSM003891.0E-16154216IPR001356Homeobox domain
PfamPF000465.4E-16156210IPR001356Homeobox domain
CDDcd000868.44E-17156213No hitNo description
PROSITE patternPS000270187210IPR017970Homeobox, conserved site
CDDcd146860.00674205243No hitNo description
PfamPF021837.3E-11212245IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-26212255IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTKGDDLALS LSLGGASETH RRPHPLQINP TASPCPAAAT PWDVLLTSSL SEPPRPPEMF  60
LGDAVRPLLK GIGVNQAPAA NRAPDVEEEE EAGLSSPNST VSSVVSGGAG GKRSEREEHL  120
VCRRPNSSSS NGEENDLARP FTRGVSDEED GGDGSRKKLR LSKEQSAVLE ESFKEHNTLN  180
PKQKMALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKRCCENLTE ENRRLQKEVQ  240
ELRTLKLSPQ FYMHMTPPTT LTMCPSCERV AVSSSSSSGP VPTVVSSAPP AADNLGGNAG  300
GGLVHHRPQQ PLQQHHLHHK PTPRHLFPAP AVPIPAAGGA QSLPWPPTPL RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160SRKKLRL
2204212RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623980.11e-103PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotP466023e-87HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2G5CBT71e-105A0A2G5CBT7_AQUCA; Uncharacterized protein
STRINGAquca_067_00037.11e-106(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-69homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]