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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Spipo15G0040600 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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| Family |
BBR-BPC |
| Protein Properties |
Length: 277aa MW: 30274.6 Da PI: 10.2617 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo15G0040600 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 260.2 | 1.2e-79 | 1 | 276 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..maflqrdkalaernkalverdnkllalllvens 90
md +g rn+g y+e+ + k l+lql+s er+ ++ + a+ +++ +v+e ++ +r+ ++ +nk+l+++
Spipo15G0040600 1 MDGNGGLGmRNWGeYFEQP-QRKGGLSLQLVSAG-EREPRPFLSSGAFLHRDCSVQEPSipTDY-MREGWIYP-----CRDNNKMLHVTN---- 82
777777777****899887.8899******9987.99999988888889988888877666889.99*****9.....444455555444.... PP
GAGA_bind 91 lasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184
++++p+ ++ +++i++l+q +d+a++ +e e + p + ++ +++++ ++++++k +k+kk s++ + ++ sa+
Spipo15G0040600 83 PKQVAPFDAHSAGSVHTIQMLKQ------SDPAAP-KEGE---KAPAV---NVLRKRSRG-----MNSTRAQKPDKPKKASAQRGEGISTGSAS 158
34578898888888888887777......555555.2222...23322...222222222.....22333444444444333333333333333 PP
GAGA_bind 185 .erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
+k k++ d+v+ng +lD+s+lP+P+CsCtG+++qCY+WG GGWqSaCCt +iS+yPLP++tkr+g+Ri grKmS+gafkk+LekL +eGy
Spipo15G0040600 159 aLPVKGGKRCSDVVINGLDLDISRLPTPICSCTGTPQQCYRWGLGGWQSACCTNEISMYPLPMNTKRQGTRIPGRKMSHGAFKKVLEKLVGEGY 252
36799***************************************************************************************** PP
GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
+ls p+DL+ hWAkHGtnkfvtir
Spipo15G0040600 253 NLSSPIDLRGHWAKHGTNKFVTIR 276
***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MDGNGGLGMR NWGEYFEQPQ RKGGLSLQLV SAGEREPRPF LSSGAFLHRD CSVQEPSIPT 60
DYMREGWIYP CRDNNKMLHV TNPKQVAPFD AHSAGSVHTI QMLKQSDPAA PKEGEKAPAV 120
NVLRKRSRGM NSTRAQKPDK PKKASAQRGE GISTGSASAL PVKGGKRCSD VVINGLDLDI 180
SRLPTPICSC TGTPQQCYRW GLGGWQSACC TNEISMYPLP MNTKRQGTRI PGRKMSHGAF 240
KKVLEKLVGE GYNLSSPIDL RGHWAKHGTN KFVTIR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
