![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo14G0053900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 193aa MW: 21205.5 Da PI: 9.1315 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.4e-11 | 43 | 89 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + E+ RRd++N++f +L +l + + +K +Ka+iL Av+ +++L Spipo14G0053900 43 KACKEKMRRDKLNDRFLQLGAILEPG---KPPKIDKAAILSDAVRMVNQL 89 5678*********************9...99***************9999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.909 | 38 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-8 | 43 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-13 | 44 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-8 | 44 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-13 | 45 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.67E-8 | 47 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MSLVLAVSSC GGTATSHSGA EMFAPQDTFY RMRSEATSLP NSKACKEKMR RDKLNDRFLQ 60 LGAILEPGKP PKIDKAAILS DAVRMVNQLR SEAQKLKEAN EGLQETIQEL KAEKNELQDE 120 KQRLKVEKES LEQQVRAMSV PSSYVPHPPM MPAGPFPVPR PAGSGGKLMM LVIGFSGFPM 180 WQYMPPVNID TS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803823.1 | 2e-75 | transcription factor ILR3 isoform X1 | ||||
Swissprot | Q9FH37 | 1e-63 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1D1XV53 | 4e-77 | A0A1D1XV53_9ARAE; Transcription factor ILR3 (Fragment) | ||||
STRING | OS07T0543000-01 | 6e-74 | (Oryza sativa) | ||||
STRING | Si030877m | 4e-74 | (Setaria italica) | ||||
STRING | OBART07G17630.1 | 6e-74 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-60 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo14G0053900 |