PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo14G0008700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | WRKY | ||||||||
Protein Properties | Length: 573aa MW: 61255.8 Da PI: 6.9168 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.5e-30 | 225 | 284 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg Hnh+ Spipo14G0008700 225 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApGCPVRKQVQRCADDMSILITTYEGIHNHP 284 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.6E-32 | 210 | 286 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-28 | 218 | 286 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.92 | 220 | 286 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-37 | 225 | 285 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.0E-27 | 226 | 284 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MDVMVKRSSA VKENNKARTI SSEEDEDVLE LDIEADKKDG RKSTFPSPDQ KGSSFGGQDN 60 QLESTREEIG EMKQENERLK MILARIMNDY QSLQTHLIDV VNKGLDKESL ENAEADRETD 120 EPELVLLSLG TSSWRHKKEE KAITGTRSEG DEQVKGDLSL GLGTHSNSSH ENSFEDTKEE 180 EAAGEIWPPS KALKTMRSGE DEVSQSIHVK KARVSVRARC DAPTMNDGCQ WRKYGQKIAK 240 GNPCPRAYYR CTIAPGCPVR KQVQRCADDM SILITTYEGI HNHPLPMSAT SMASTTSAAA 300 GMLVSGSSSS RPSIPAAAMA PSGGVAGATL HGLNFGIPDD PRQRQLYLPN ASISSSPSHA 360 TITLDLTTPP SSSHSAQLGG FSSSFSAGPR FSHSNFSSSS SDPNLNQTTL WNSPFLTHGS 420 QAYGNKSPLG SFSVATQQPH ERFYHPYTQK PPNSSPLPDG AIAAATKAIT SDPGFQTALA 480 AAITSAVGGK GTQGMAETLF KNLRWGEHLS PVTNLASSPS GKGCGPSYLT RSAASNSSTP 540 QQGEIRFLQP SSGFSVCKSA SSSPPNNRER SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 212 | 286 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017701728.1 | 1e-172 | probable WRKY transcription factor 72 isoform X2 | ||||
TrEMBL | A0A1D1YDU1 | 1e-179 | A0A1D1YDU1_9ARAE; Putative WRKY transcription factor 72 (Fragment) | ||||
STRING | XP_008809713.1 | 1e-169 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 2e-70 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Spipo14G0008700 |