PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0029800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HSF
Protein Properties Length: 483aa    MW: 52293 Da    PI: 6.0427
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0029800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.5e-34191092101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y+++ed++++e++sw + ++sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +gkk+ll+
  Spipo13G0029800  19 FLLKTYDMVEDAATDEMVSWGDGKKSFIVWNPPEFASVLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVQGKKHLLK 103
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Spipo13G0029800 104 NIHRRK 109
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-5715108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-3315108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-3615108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.9E-3019108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MALDGGGGGG GGGGGPAPFL LKTYDMVEDA ATDEMVSWGD GKKSFIVWNP PEFASVLLPT  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEDFVQGKKH LLKNIHRRKP VYSHSNPPGG  120
GDSERASMDE EIDRLTREKG ELEAKLARFK DQQSGTKFQL KDLDRRLQDM EQRQRKMLSF  180
VSRAVQNPVF VDHLVQMAGA APVDFSEAHK KRRLPGDVEG GQQLVPGNSF PDHGSTTTTT  240
STAILKPDAC RLFQRDFSKL KLGLSSAISD SNVLSPRTQS SDEDGFSPPR RLTGEGGHSK  300
PECLAILPEA MELSDSTTTC CPGTKNVSLP WQAGDAGEGD RHISCHLNLT LASSPLQLGD  360
GLSSAGIPSS RTPELGNTSA GGFSKNSATR EGELDRAATG KIQSSSAANQ PSSAAAAAAA  420
AAPGKPNDKF WEQFLTERPG SSDTEEANSA LRVNSPAEQQ QEEDRDGEKL WRSRRDIDQL  480
SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-20110812129Heat shock factor protein 1
5d5v_B2e-20110812129Heat shock factor protein 1
5d5v_D2e-20110812129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813276.11e-157heat stress transcription factor A-5-like
TrEMBLA0A1D1XTI41e-172A0A1D1XTI4_9ARAE; Heat stress transcription factor A-5 (Fragment)
STRINGXP_008813276.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-117HSF family protein