PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0027100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 280aa    MW: 31061.1 Da    PI: 4.4527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0027100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-1284126855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ErrRR r+++++ eLr+++P+      +K++Ka+i   A+ Y+k+Lq
  Spipo13G0027100  84 SERRRRGRMKDKLYELRSMVPNI-----TKMDKASIIGDAISYVKDLQ 126
                      6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1874141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.92376125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-1378130No hitNo description
Gene3DG3DSA:4.10.280.102.1E-1680142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-1582131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-984126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MESCPSLGGE FDQLDCLLGC DEFVEFDGED LCSSVVEQVL GFCSDGDPDL VAGDAWFGGV  60
VEEEENSSET TARPGRDRAR TLVSERRRRG RMKDKLYELR SMVPNITKMD KASIIGDAIS  120
YVKDLQKQAR MLTEEIARLE SSAEGAYRSP LHPREREKQG SMDPLPKRAM LEFSGCGLGD  180
KRFHLRLVCQ NGEGTPAAVY RALEKLTFLH QESSTLSTCS EKREVTLTVK GDGYVGEIDV  240
SVLKPWVMTA LLDEGFGFNV ENSMLTREEQ ELIILVTVD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-46FER-like regulator of iron uptake