PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0025100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 443aa    MW: 46650.9 Da    PI: 7.4862
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0025100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.5e-41104180278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC++dls+++eyhrrhkvCevhsk+p v+v+g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  Spipo13G0025100 104 CLVDGCTSDLSNCREYHRRHKVCEVHSKTPIVMVKGHEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQP 180
                      **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-3297165IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.906101178IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38103181IPR004333Transcription factor, SBP-box
PfamPF031104.1E-30104177IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEWELKMPPW DLAELGRDGE PSLGSLVSSS SSLGRQATSP LDCSVDLKLG GSGNFELFHS  60
WKSRPGRSTA TTVSSLSSSA MAVSSSASSK RARTLGSGAQ NASCLVDGCT SDLSNCREYH  120
RRHKVCEVHS KTPIVMVKGH EQRFCQQCSR FHLLVEFDEV KRSCRKRLDG HNRRRRKPQP  180
ADAINTGRFF ADRQGSSRFS SFSPMFSGGV AAPEPNWAAA AAAAAAMKAE EDAALYGQGL  240
PLVQKQDHHL LGSFSRGYYH HQHKEGRQFP FLEEGGYGGR AGPAAAVVAE IHPLLGAIAT  300
SESSDSKIFS SGGFAAHGHD SDCALSLLSS PTQNSGINDP GGATAAVAED RIPMGQPLLA  360
VAGGLHQYGL SLFSRSSHAS SHVVSPTGFS CAAAGMEEQV GGGHAVLVAD AGDAGLHSQG  420
YFHLGIDGGS DRASQAVPFS WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271041771184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160177KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926841.11e-133squamosa promoter-binding-like protein 16
TrEMBLA0A1D1Y8E31e-143A0A1D1Y8E3_9ARAE; Squamosa promoter-binding-like protein 16
STRINGXP_008806431.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-44SBP family protein