PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo12G0045200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | WRKY | ||||||||
Protein Properties | Length: 655aa MW: 68871.8 Da PI: 7.8229 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.2 | 3.8e-29 | 230 | 285 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg+nWrKYGqK+vk+ e++rsYY+Ct+++C +kkkver++ d++vvei+Y+g Hnh+ Spipo12G0045200 230 DGFNWRKYGQKQVKSGENSRSYYKCTHSNCFAKKKVERCQ-DGHVVEIVYRGGHNHD 285 9***************************************.***************7 PP | |||||||
2 | WRKY | 101.6 | 4.7e-32 | 482 | 539 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve+++ dpk+++itYegeH h+ Spipo12G0045200 482 SDGYRWRKYGQKFVKGNPNPRSYYRCTQLGCPVRKHVEKDSVDPKAFIITYEGEHSHD 539 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-25 | 218 | 287 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.046 | 223 | 287 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-23 | 226 | 287 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-30 | 228 | 286 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.7E-22 | 230 | 285 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-33 | 466 | 541 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-27 | 476 | 541 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.532 | 476 | 541 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 481 | 540 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-26 | 483 | 539 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MAEEPSSEAM EQAGQQEDAG EKPPSPLPSA SPPRKKRENT SSPAAAAAAD PTPAPPPASA 60 KGAGTKTSAL ETLAIPVPIT ANSGFLSNGS HGVVDCRSFS QLLAGAMASP VGNSRSTPIL 120 ALPVDAVRLP VVAVPCIIAP AALLESPGFA GQFAMTHQAV LATVTAHAQM QLQTGYTSPS 180 VISTISPLPL QQVPPSASED NGVSSVVEQS PSADQKLQTD RVALKTTSGD GFNWRKYGQK 240 QVKSGENSRS YYKCTHSNCF AKKKVERCQD GHVVEIVYRG GHNHDPPQKT KSPKERGPPS 300 SGHSGDNETL TPVISDANGP IHLASKASCR RPSNSNPPQK TKQLKERRPQ SIGSSGDNET 360 ITLASGDING SEPSPSKLEE NSGSDSSDRQ LARPSDRDGD ADIKNEEGPG DEPSPKRRLV 420 YSTFPSLVFK IFYSLISGMI FFYFNFFSKT MESPLTSPTP PSKTVKEQRV VIQKVSDGGL 480 VSDGYRWRKY GQKFVKGNPN PRSYYRCTQL GCPVRKHVEK DSVDPKAFII TYEGEHSHDR 540 PPPKHDGDPP ALLIAAAAAA AASGSAGGPP PAAPPSPPAD DGPKVESQPD VDSKSSEHGG 600 DQTLESAQTL LSMGLKPAAA AAAAGEESAD VKGSDAVPRP LFNKNRPAVP VQNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 472 | 541 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 472 | 541 | 8 | 77 | Probable WRKY transcription factor 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D1XTV7 | 1e-175 | A0A1D1XTV7_9ARAE; Putative WRKY transcription factor 4 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5820 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.2 | 9e-33 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Spipo12G0045200 |