PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0040900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 1072aa    MW: 116429 Da    PI: 7.9386
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0040900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.18.2e-41157234178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv++C++dls+ak+yhrrhkvCevhsk+++++v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+qa
  Spipo12G0040900 157 TCQVDDCKTDLSNAKDYHRRHKVCEVHSKTTKAMVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQA 234
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-34154219IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.223155232IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-38156235IPR004333Transcription factor, SBP-box
PfamPF031102.2E-29158231IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.8E-6861955IPR020683Ankyrin repeat-containing domain
CDDcd002042.45E-6862956No hitNo description
SuperFamilySSF484031.26E-5862958IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1072 aa     Download sequence    Send to blast
MDGEVSAQVA SPIFLHQGLP GRFHEVPALA RKRDLPWQGP NANLNPQSPP QSQQRLMSSG  60
YPNVQSNWNP KSWAWDSTAF VARPAADAST SRISEMEQQK KNGEANVKDL ASVAPPEEEE  120
SLTLKLGGRS YATEEPAVRP NKRVRPGSPG IGVNYPTCQV DDCKTDLSNA KDYHRRHKVC  180
EVHSKTTKAM VGNQMQRFCQ QCSRFHLLSE FDEGKRSCRR RLAGHNRRRR KTQAEDASSR  240
LLLPPNRANT GNGNLDIVNL LAILARLQGR CGEPQGDSSL PDKDGLVQIL NKINALPGLN  300
SSAAMPRTGG FDLNVSQASE DLERLPNTDA SAMDLLAVLS AALKASGTNM AAALSQGSSD  360
GSADDKTKIN SFEPPADANS QIKIPSFSPI SGDRRSGAPR PSTDAAEHPV EEARPSLQLQ  420
LFSSTEEDSP PKMGSCRRYL SSESSNPMED GSHSSSPPIE RRLFPLQSGT EALRPVGTAT  480
CRANNATVAA VANRDWGAPL ERFKDPERRV GSRATSSLPH QAGYASSSSG SDHSPSSSHS  540
DVQDRTGRII FKLFDKDPSN FPPSLRTEIL AWLSHSPSEI ESYIRPGCVV LSIYLAMPAF  600
AWDELHEEFL QRVSALVHRS DSDLWKSGRF LVHTDRQLAS HKDGKIHLSK SWRSWGAPEL  660
ICVSPLAVVG GEETSLVLRG RNLTAPGARV HCTFMGGYSS KELASSPSPG AAVCDDSSVE  720
TFNFPGGSPN AFGRCFIEVE NGLKGNSFPL IIADGTICRE LRLLEPDVEV DLRADGEARP  780
RSREDCLHFL NELGWLFQRR QSCPPRLGDF SSSRFKFLLV FSVDRDFAAT VGKLLDILAE  840
KCCGDGGAVQ QSLEMLSEIQ LLHRAVKRKC RKVVDLLLHY SVADGTDGRR FFPFPPDLKG  900
PGGFSPLHLA ASMQDSADIV DALTDDPQEK GLTCWASAVD DNGQSPHGYA AMRNNHAYNR  960
LVAGKIADRR NAQVSITIVN GEGAAPARSW AAMEVGKPPA ARSTSCARCA MGERVRIRST  1020
LRPQGLLQRP YVHSMLAIAA VCVCVCLFLR GAPELGSVAP FKWETLGVGT M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29146231384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932155.10.0squamosa promoter-binding-like protein 15 isoform X1
RefseqXP_010932156.10.0squamosa promoter-binding-like protein 15 isoform X1
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A1D1Y3W20.0A0A1D1Y3W2_9ARAE; Squamosa promoter-binding-like protein 15
STRINGXP_008799143.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14