PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0012900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 295aa    MW: 31788 Da    PI: 4.6331
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0012900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-071357442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     r C+ +++ +   +C+ ++ +lC  C    H        H++v+l
  Spipo12G0012900 13 RACDSCQSAPPAVYCRADSAYLCGGCDARVHAAnwvasrHERVSL 57
                     57*****************************66888888998875 PP
2CCT712.9e-24225268144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrktR+FeK+irY+sRKa+Ae+RpRvKGrF+k++
  Spipo12G0012900 225 REARVLRYREKRKTRRFEKTIRYASRKAYAETRPRVKGRFAKRS 268
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-101057IPR000315B-box-type zinc finger
PfamPF006434.9E-61357IPR000315B-box-type zinc finger
CDDcd000211.38E-81357No hitNo description
PROSITE profilePS501199.7551557IPR000315B-box-type zinc finger
PfamPF062036.7E-18225267IPR010402CCT domain
PROSITE profilePS5101716.866225267IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKKKLAGSGG GGRACDSCQS APPAVYCRAD SAYLCGGCDA RVHAANWVAS RHERVSLCDA  60
APVTCKEEEE DDDDDDGDDE VYDGDEDEVS SWLLLNSGKN SGQGLLFAGE DNDYLDLVGY  120
GSSGETQQTQ GGDGKKLDGR EEQVLLQQQQ LSFPMEMAAA YEASNGFYGY TGFFSHGDQP  180
AMDARTVPDV SAGAVAHFRQ PKGTIDLFAG APAPPAATPF GPGDREARVL RYREKRKTRR  240
FEKTIRYASR KAYAETRPRV KGRFAKRSDA ELEVDQIFSA AAMAETGYGV VPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636337.12e-80PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965023e-70COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A0D3R1S53e-83A0A0D3R1S5_9ROSI; CONSTANS-like 1 protein
STRINGGorai.008G059900.16e-79(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56223140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.18e-36CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]