 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Spipo12G0012000 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 315aa MW: 34562.3 Da PI: 4.5633 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo12G0012000 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 64.1 | 2e-20 | 106 | 159 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq++ Le Fe ++++ e++ eLAkklgL+ rqV +WFqNrRa++k
Spipo12G0012000 106 KKRRLTPEQVQMLEMSFEAENKLEPEKKSELAKKLGLQPRQVAIWFQNRRARYK 159
5678*************************************************9 PP
|
| 2 | HD-ZIP_I/II | 130.4 | 7e-42 | 105 | 196 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqv++LE+sFe+e+kLepe+K+ela++Lglqprqva+WFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L +++++Lr+++
Spipo12G0012000 105 EKKRRLTPEQVQMLEMSFEAENKLEPEKKSELAKKLGLQPRQVAIWFQNRRARYKTKQLERDFDRLKSSYDSLLADHDSLLNDNHRLRSQIL 196
69**************************************************************************************9985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001558 | Biological Process | regulation of cell growth |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MLGAMKRKIG LDGSASEVNT EIFKDSRRMI FDYTSSSSSS TSPGNILILG GRSKSGFGGG 60
GGRSALLLEE ARFGSAAAVA NWPSNYDPSI TDEDYYYYDD KMLPEKKRRL TPEQVQMLEM 120
SFEAENKLEP EKKSELAKKL GLQPRQVAIW FQNRRARYKT KQLERDFDRL KSSYDSLLAD 180
HDSLLNDNHR LRSQILSLTE KLQAKGSPAV TAAAAAAGSN SDGDPQPVVL GPAKADDQLS 240
TGTVVDQEGP HHLMDSGDSD LPEDAGSYDG GCGVVQSEME EGSDVEGSRV FNFCNDVPED 300
QELIWSTMHC WEWT*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 153 | 161 | RRARYKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
