PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo11G0044300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bZIP | ||||||||
Protein Properties | Length: 647aa MW: 70814.7 Da PI: 6.7373 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.8 | 1.8e-11 | 471 | 529 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK+ +i eLe kv+ L++e ++L +l +l+ ++ l+s++ Spipo11G0044300 471 KRAKRILANRQSAARSKERKLRYISELEHKVQILQTEATTLSAQLTMLQRDSSDLTSQN 529 9******************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-17 | 467 | 531 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 469 | 532 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.59E-11 | 471 | 521 | No hit | No description |
Pfam | PF00170 | 3.8E-10 | 471 | 529 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.8E-11 | 471 | 528 | No hit | No description |
CDD | cd14703 | 1.25E-24 | 472 | 521 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MEPCEEARND LMQRLQSSMA TSSSSLPKQQ DQNPSNQMQQ QAPPLPPPGQ HPFGSRFDLL 60 HVYRSGSPLH HFSGNFGSLE KTSATPSAHS GGGGNNMTSV GNTSKRPAGI PPTSPYSQTL 120 PTASARSPTQ QSGLQSFGHG PFHTRSLSQP ASLYSPDLLP PLSPSQYRDS PSATVVYDPM 180 STDTPTENRD IKCQSTTPPP GTFSRSNPSR TGDALPPRKA HRRSHSDIPF GFSQGSFSSA 240 FPPLTQRPQG GYLERCLSVV DNAGSVGKQV EGQFVKQELD WDRDLDSSAE GTVERKSEGD 300 AGDDLFSAFM NLDNLDALNS SGTEDKREDM DSRASGTKTN GADSSENEAE SSVNEGGGRV 360 LPQKVKTSPS LEKEGSKRSA AGDPDLNVSA SRHSRSISMD SFMEKMNFGD ESPKLPPCPG 420 ARPGQDSYTN SLDGTSSNFS LDLANGEFSG VELKKIMANE KLAEIALTDP KRAKRILANR 480 QSAARSKERK LRYISELEHK VQILQTEATT LSAQLTMLQR DSSDLTSQNN ELKFRLQAME 540 QQARLRDALN EALTGEVQRL KLATREMADG NPPGNLNQHL SLNPQLFQLH QHQQHQQSTQ 600 LPIYQLQRQQ QQQQQQQHQQ HQQHQQEQNH QKQQQESSPA AKCEAN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084427.1 | 0.0 | transcription factor RF2a | ||||
TrEMBL | A0A1D1ZEL4 | 0.0 | A0A1D1ZEL4_9ARAE; Transcription factor RF2b (Fragment) | ||||
STRING | XP_006471421.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006487269.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006493636.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6247 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-110 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo11G0044300 |