PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo11G0036800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 296aa MW: 31917.4 Da PI: 9.1589

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo11G0036800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.9e-09	83	133	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r h ++Er+RR +N f+ L +llP++ ++ + a+i+ ++++Ik + Spipo11G0036800 83 QRIRHIAAERNRRMMMNLHFSSLCSLLPPS---FLQRGDQASIVGGTIDFIKVM 133 6889***********************9...89**************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.90E-9	80	138	No hit	No description
SuperFamily	SSF47459	6.15E-13	81	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-9	81	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.614	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-6	83	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-4	88	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd02116	0.00168	223	279	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGMRKECRGI ANRRTSPSSV THGAEPMSTM DHRCGRQIQS SCRDGEPRRA APATNTAVNA 60 SPAIWGGAKC GEKRKRSAGK DKQRIRHIAA ERNRRMMMNL HFSSLCSLLP PSFLQRGDQA 120 SIVGGTIDFI KVMEQLLQTL LAEKRTRSGG VTTTLSPLTV AAQYLYAYCS SNQNTTFASA 180 PPSTAAPREE EAGDDKFEGG NGGADPTTVA NVEATVVQTQ VNIRVLSRRR PGQLLRVTVA 240 LEKLRLSVLH LSVTSLADAV VYSLILKMEE DCELTSAEEI AAVVHEIFST IATCG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010251348.1	7e-55	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7957	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	3e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo11G0036800