PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

GATA

Protein Properties

Length: 312aa MW: 33031.6 Da PI: 6.6565

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo11G0034200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56	5.4e-18	217	251	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l Spipo11G0034200 217 CTHCSSEKTPQWRTGPLGPKTLCNACGVRFKSGRL 251 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	6.4E-79	13	302	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	8.7E-17	211	261	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.42E-14	215	275	No hit	No description
PROSITE profile	PS50114	11.253	215	247	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.1E-13	215	249	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.35E-14	216	263	No hit	No description
PROSITE pattern	PS00344	0	217	242	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	9.1E-16	217	251	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGKMPIMGME AAGSSFSAAY VCGLPSSDAM RIDDLLDFSE QDDLFDAAAA LPESIQSHIL 60 PLHETSSTAG YLDSSAPQMC TFSDNLYIPS EEAAELEWLS KFVDDSFSDI PFPSCQGWSG 120 GNPVPSSNSS AVGSDPSAVP SRARSKRSKA PAAALQLASS TAWSSPQQSS SSATSSSSSS 180 SSSEFPPGVA SSNPKAPSTS SGRKKETRGE DGGVRRCTHC SSEKTPQWRT GPLGPKTLCN 240 ACGVRFKSGR LVPEYRPAAS PTFVLTQHSN SHRKVMELRR QKDVLRQQGS SATAVATSPR 300 PELLYRDYEV C*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796101.1	4e-81	GATA transcription factor 4-like
Swissprot	O49741	2e-62	GATA2_ARATH; GATA transcription factor 2
TrEMBL	A0A1D1Y8V9	1e-105	A0A1D1Y8V9_9ARAE; GATA transcription factor
STRING	XP_008796101.1	1e-80	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4621	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	2e-49	GATA transcription factor 2

Link Out ? help Back to Top
Phytozome	Spipo11G0034200

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]