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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Spipo11G0027600 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 358aa MW: 40076.6 Da PI: 7.5335 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo11G0027600 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.2 | 7.6e-20 | 22 | 76 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ +++t+eq+++Le++F+++++p++++r+eL ++l+L+e+qVk+WFqNrR+ +k
Spipo11G0027600 22 KRLHRHTPEQIQQLEAFFKECPHPDENQRKELCRRLSLEEQQVKFWFQNRRTLMK 76
455789*********************************************9776 PP
|
| 2 | START | 93 | 5.8e-30 | 164 | 346 | 2 | 164 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82
la++a++elvkka aeep+W + +n+de++ f++s + + a++a+ +v + +l l+d + +W ++ + +t
Spipo11G0027600 164 LALSAMEELVKKARAEEPLWDRRGageeAALNEDEYRWAFPQSLRprpagFVTAASKATEMVMISSSTLIDALMDAN-RWPGIFPnvvaRSSTA 256
6899****************9998898899**********88766999999**************************.88777777777***** PP
EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEE CS
START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskv 164
vis g g lqlm+aelq+lsplvp R+ f+R++++l g+w++vdvSv + p+ +s ++lpSg+++e+ +ng+skv
Spipo11G0027600 257 HVISAGiggtrnGRLQLMTAELQVLSPLVPlRELSFLRFCKELAHGVWAVVDVSVGTVGEDPSsPHSPLDYRRLPSGCMVEDIANGYSKV 346
*******************************************************666655554444455569****************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MSSGDLRDDG RDSDNPPRKK KKRLHRHTPE QIQQLEAFFK ECPHPDENQR KELCRRLSLE 60
EQQVKFWFQN RRTLMKVMTQ LERQENALLK QENERLRMEN RALHAAARSP VCRSCGGGAE 120
LNESLWLENA RLKEELHRCS GALAGRQPPH TETSSLEISA LVDLALSAME ELVKKARAEE 180
PLWDRRGAGE EAALNEDEYR WAFPQSLRPR PAGFVTAASK ATEMVMISSS TLIDALMDAN 240
RWPGIFPNVV ARSSTAHVIS AGIGGTRNGR LQLMTAELQV LSPLVPLREL SFLRFCKELA 300
HGVWAVVDVS VGTVGEDPSS PHSPLDYRRL PSGCMVEDIA NGYSKVLQRK PVLAGDE*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 16 | 23 | PRKKKKRL |
| 2 | 17 | 22 | RKKKKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
