PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0049800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 682aa    MW: 74163.7 Da    PI: 5.9665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0049800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.5e-15453499455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Spipo10G0049800 453 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 499
                      6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-18446508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-18446507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.14E-16452501No hitNo description
PfamPF000105.3E-13453499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-14455504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MPEPRSHQSL LLGPFPEVSC GNVLKFKDVM IVDESILHDR HQDMRPNIDT MSCEDLSALE  60
EQMGAVSTGL AENVVQESLK QQKYKSSASC KADSCCICLE DYAEGEDLGG VGLWALFPRF  120
VYWKIASSAE LLPALENSLT YWCRLAASGS HKQEEQTGNL SWGGWRRTPC SRTSLLHLPA  180
KSKPSFLDDL SLSILGCLSP VFPFKQATKR SDLRCSGNGN ALEESTLLDE VLILDESVSE  240
LVLNMFQREE EDYADGEDVV APSCRHSSRT ACAGFAAIPH NSVAALVLAA AAAILVVIIV  300
IWRDRKGGLA VGEEEGLQRW RKGGGREMEG LTVGAGHDFM LDNGMIRGVP DDHWARQMVF  360
SPFAGLRQPA ASHLRPSPGG AAGTAAEGGG DVGTAVASLG FDPAALLQGG AEMCPAADFD  420
PYDGESEEGA EASEEQRRPP PRSGSKRSRA AEVHNLSEKR RRSRINEKMK ALQNLIPNSN  480
KTDKASMLDE AIEYLKQLQL QFFKLLQRFP EQMLSMRNGL SLQPMYLPGT LPALQSSHVR  540
MGLNPDDGSL MSMGVGMVPA SQDASVHHSS LEMAKRGASS HQHMMPSVAA LPDPGTATSL  600
GIESSQFHPF PFSVPEEEIF EQGRLDAGHG DGRHCRSERA GAGRRHACRE AVEALRRSLS  660
KDHHQKKPPY SDFTRERPAL S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-28bHLH family protein