PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0038200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 320aa    MW: 35027.6 Da    PI: 5.3838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0038200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.5e-0737691955
                     HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      f  Lr+l+P +    ++K +Ka+ L +++eYI+ Lq
  Spipo10G0038200 37 TFRILRDLVPDS----DQKRDKASFLLEVIEYIQLLQ 69
                     5889*******9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-93682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-103676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-63872No hitNo description
PfamPF000102.1E-43869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAAAAGHFSR AHQTASRSNK SFMDDDDDDD DDFGKETFRI LRDLVPDSDQ KRDKASFLLE  60
VIEYIQLLQE KVLKYELNYP VYNPNNAKLV PWIKFIPLSH PCFDEYLPNA THPLTYFICK  120
ELFQLCLRTI VKLGAVFHGR LKKKNSQGPG DPSLRRNSPA SSGFMFPSDG AMSDAQVAIS  180
SSQDVAESEN LSSALAGKLA VPPIPIQYPP ANREGLCQPQ HRLITDLENV AASPQALLGL  240
RPCIMGSTID GDALSGQEEL VIDDGTISVS CEYSDRFLAA LAQALRNSGI DLSQASISVQ  300
INLARRSVAW PGPTPKLNH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.19e-19BES1-interacting Myc-like protein 2