PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo10G0023000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 318aa MW: 34616.2 Da PI: 9.7959

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo10G0023000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	190	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a++L + +++++sLq Spipo10G0023000 190 SHSLAERARREKINARMKLLQELVPGC----SKISGTAQVLDEIINHVQSLQ 237 8***********************9....78899*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-15	184	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.86E-9	184	241	No hit	No description
PROSITE profile	PS50888	14.691	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-15	186	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-7	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.4E-9	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MPEVFRFGEI RRGGREREST AENGSGSFTA LLGLPANRAM ELLHEVETGR GPLIQFADVE 60 RNQKLLDGSC FGRLPTFPSD SDLVERAARF SIFATEDSPR MPSAAVCSAE AVKTERPDSD 120 SNPKSPPPQQ RPPKRKGYCD KKNKLKASGK RPKSRSAGEI SKTVEENDGG EEEKLPYVHV 180 RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCSKIS GTAQVLDEII NHVQSLQRQV 240 EFLSMRLAAV NPGIDFGGLD SFLATNGGAP RPEQAALWPE AHRPVRLADL LPKPGQQSLW 300 GRGVVVLPGN PTSAANL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010913936.1	2e-89	transcription factor bHLH48 isoform X1
Refseq	XP_010913937.1	2e-89	transcription factor bHLH48 isoform X2
Refseq	XP_029118663.1	3e-90	transcription factor bHLH48 isoform X4
Swissprot	Q8VZ02	9e-62	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1D1XJC9	1e-107	A0A1D1XJC9_9ARAE; Transcription factor bHLH48
STRING	XP_008782895.1	5e-83	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	8e-65	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo10G0023000

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]