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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo10G0022600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 141aa MW: 15384.5 Da PI: 5.7624 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 6.9e-06 | 98 | 119 | 34 | 55 |
TTS-STCHHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksLq 55 + ls ae+L +A +YI++Lq Spipo10G0022600 98 AERQLSTAEMLDMALDYIRDLQ 119 3455*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.8E-7 | 77 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-5 | 94 | 123 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-6 | 98 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MYGSPTTSRD LNLAFEVASE IPGLPVSSWD DPSLLSDGFV GSLRRARDPP EVQNGDAGIY 60 FSLPKNSPEM ASLLRFQDAV PCKIRAKRGC ATHPRSIAER QLSTAEMLDM ALDYIRDLQE 120 QVKKLSKSKA DCTCLHNDGV * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020082673.1 | 9e-39 | transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 2e-27 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A1D1YA11 | 4e-45 | A0A1D1YA11_9ARAE; Transcription factor bHLH130 | ||||
STRING | TRIUR3_26625-P1 | 5e-37 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 8e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo10G0022600 |
Publications ? help Back to Top | |||
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