PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0020600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 356aa    MW: 35959.2 Da    PI: 8.7104
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0020600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-4155130176
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      +CqvegC adl+  k y+ rhkvC +hsk+p+v+v+g+eqrfCqqCsrfh+l+efD++krsCrrrLa+hnerrrk+
  Spipo10G0020600  55 RCQVEGCGADLTGSKAYYCRHKVCGTHSKSPKVVVAGTEQRFCQQCSRFHQLQEFDQGKRSCRRRLAGHNERRRKP 130
                      6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-3548117IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.88953130IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-3954133IPR004333Transcription factor, SBP-box
PfamPF031101.4E-3256129IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEMGSGSAGG GDSPRGLKFG KKVFFESLGG GGSSSAAAGK RGKSAAQGGP PQPPRCQVEG  60
CGADLTGSKA YYCRHKVCGT HSKSPKVVVA GTEQRFCQQC SRFHQLQEFD QGKRSCRRRL  120
AGHNERRRKP VLGTVGHCLV PPPPPPFEGG GGRFGSFLMD FSSHPRLAAT PGEVWPSVRA  180
DGGVPGTQWL GGSALLPGGG AAASLGHPYL QALPSGTLFS SQGPPPGEGL GVSDSGCALS  240
LLSTQPWGSS APAAARNPPP AAPGGGYGGQ LGAATADDFA TADNSWILKG HEGGGSSGTH  300
VIPPEQGLGR LGEPPGDASQ FSGELELALQ GGKPCLDSGL GTAYGFPSSR IQWPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32561291184squamosa promoter binding protein-like 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928832.11e-106squamosa promoter-binding-like protein 14
TrEMBLA0A2H3XF461e-103A0A2H3XF46_PHODC; squamosa promoter-binding-like protein 17
STRINGXP_008782879.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-40squamosa promoter binding protein-like 9