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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Spipo0G0158000 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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| Family |
HD-ZIP |
| Protein Properties |
Length: 290aa MW: 32473.4 Da PI: 10.4381 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo0G0158000 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.8 | 3.8e-18 | 88 | 140 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
Spipo0G0158000 88 KRRLNVEQVKTLEKNFEMGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 140
447999**********************************************9 PP
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| 2 | HD-ZIP_I/II | 129.8 | 1.1e-41 | 86 | 176 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
e+krrl+ eqvk+LE++Fe+ +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkd+++Lkr+++a+k+en++L++++++L++e+
Spipo0G0158000 86 ERKRRLNVEQVKTLEKNFEMGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDFDVLKRQFEAVKAENDALHSHNKKLQAEV 176
69**************************************************************************************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009744 | Biological Process | response to sucrose |
| GO:0048826 | Biological Process | cotyledon morphogenesis |
| GO:0080022 | Biological Process | primary root development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
RRRQMSCNGM AQSFFGAGFL LQMQTPQGEE PPPPPSLSPL FAGDPAAAHD FHGVATMLGK 60
RSMSFSGVEE GSGEGDLSDD CSQGAERKRR LNVEQVKTLE KNFEMGNKLE PERKMQLARA 120
LGLQPRQIAI WFQNRRARWK TKQLEKDFDV LKRQFEAVKA ENDALHSHNK KLQAEVPLSL 180
SLVSLLHPHH GSSNPQRVSK DGKGRAGTHD MVVSPELKVY SSSQTSHRRR SVPSNNGGGD 240
GAVKLRHREK HGRHEWPFRW EEIYGHPPQH HADHRAPSWR GLNNEWGGG*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 85 | 90 | ERKRRL |
| 2 | 134 | 142 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC229787 | 1e-79 | AC229787.1 Oryza minuta clone OM__Ba0057D03, complete sequence. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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