PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0153900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 461aa    MW: 50466.8 Da    PI: 4.5895
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0153900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.3e-101158350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ie ++ r+  f +Rr+ + KK  EL  LC++  +++ f++ g+l +++
  Spipo0G0153900 11 IEPERHRSYAFQRRREVLKKKTMELGELCGIVTLLVCFGPGGQLVTWP 58
                    788999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0077159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.643161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-13474IPR002100Transcription factor, MADS-box
PfamPF003194.9E-101157IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVRIRTPLRL IEPERHRSYA FQRRREVLKK KTMELGELCG IVTLLVCFGP GGQLVTWPED  60
PEEVRGIIQS YRRVGLDGDG VKRRYDLAGF FEDHLKRLQR ELGLVRDAWL STLPMGSLEE  120
LMRSLDSRLA AVEESIGRAQ IEEKEQETPA TQFPRNPLPS VENINSSTDL DVQPLKGFDS  180
PDFHNVRPEL LEDVVGFRRT SMDLQSSDMQ QLWNGLGHSP PGPSPLLPPV QGGCFDLGIT  240
YLGEHLVCDF MAHSAAGEVF YPTMPCPTNV CRYSSLHGSG DVGCGGLQFD NAPLFEHSAF  300
SFVFTEFATF LAARDSYNDS LRDLCDGGGG GGGVHLPSAP SFEPSPISYL STDSGTLPAP  360
GDLGQPTMAF PLTFCHDGPL GSWDHPLGSH PIQEPSTSSL PNLPRHLPDD NHSAELCEAE  420
ALRGEFTDLW PLADAGSSFV FPDPLPNALC PAEHQSGCIW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16694411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-10M-type_MADS family protein