PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HD-ZIP

Protein Properties

Length: 207aa MW: 23661.9 Da PI: 8.7842

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0146700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	41	94	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F ++r++ ++ LA++lgL+ +qV vWFqNrRa++k Spipo0G0146700 41 KKRRLSDEQVKFLEMNFGRERKLESGRKVYLATELGLDPKQVAVWFQNRRARWK 94 56689************************************************9 PP
2	HD-ZIP_I/II	120.8	7e-39	41	132	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eqvk+LE++F +e+kLe+ rKv la+eLgl+p+qvavWFqnrRAR+k+kqlE++y +Lk+ ++a++ e+++Le+ev +L+e+l+e Spipo0G0146700 41 KKRRLSDEQVKFLEMNFGRERKLESGRKVYLATELGLDPKQVAVWFQNRRARWKSKQLEEEYVRLKSMHEAVVLEKCHLEAEVLKLKEQLSE 132 9****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.099	36	96	IPR001356	Homeobox domain
SMART	SM00389	1.4E-15	39	100	IPR001356	Homeobox domain
CDD	cd00086	1.23E-14	41	97	No hit	No description
Pfam	PF00046	1.1E-15	41	94	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-17	41	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-18	43	102	IPR009057	Homeodomain-like
PRINTS	PR00031	4.9E-5	67	76	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	71	94	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.9E-5	76	92	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSEAAHLEDK MLLSAQLPEG ERSRARRRRR KGRGEAAGEA KKRRLSDEQV KFLEMNFGRE 60 RKLESGRKVY LATELGLDPK QVAVWFQNRR ARWKSKQLEE EYVRLKSMHE AVVLEKCHLE 120 AEVLKLKEQL SEARKEMKKV SASGSSDDVS CGERGSSSPS SSFSVEAQQP LLGELGVERG 180 AELMFMHDYY YDNCVNIMDW PNLYGM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	43	RRRRKGRGEAAGEAKKRR
2	28	43	RRKGRGEAAGEAKKRR
3	88	96	RRARWKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905085.1	1e-64	homeobox-leucine zipper protein HOX12
Swissprot	Q7XI85	9e-48	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A1D1YT25	4e-77	A0A1D1YT25_9ARAE; Homeobox-leucine zipper protein ATHB-21
STRING	XP_008795628.1	7e-61	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66700.1	1e-41	homeobox 53

Link Out ? help Back to Top
Phytozome	Spipo0G0146700

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]