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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Spipo0G0119800 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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| Family | bHLH | ||||||||
| Protein Properties | Length: 83aa MW: 9002.41 Da PI: 10.9327 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 21.9 | 3.1e-07 | 48 | 73 | 4 | 29 |
HHHHHHHHHHHHHHHHHHHHHCTSCC CS
HLH 4 ahnerErrRRdriNsafeeLrellPk 29
++ e+Er+RR++++ f+ Lr+l+P
Spipo0G0119800 48 KNLEAERKRRAKLKGQFFALRSLVPR 73
66799********************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.49E-7 | 37 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 9.623 | 44 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.70E-5 | 46 | 72 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 8.1E-6 | 47 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 7.4E-5 | 47 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 83 aa Download sequence Send to blast |
MPRQQRWGTG AADHDCGGYL VAGLLGGAAA ERTQHPGGVT PEIVYKSKNL EAERKRRAKL 60 KGQFFALRSL VPRITKACER KP* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G16910.1 | 7e-09 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Spipo0G0119800 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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