PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0105100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 201aa MW: 20705.4 Da PI: 11.0174

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0105100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Spipo0G0105100 73 FECHYCRRNFPTSQALGGHQNAH 95 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.68E-7	69	102	No hit	No description
PROSITE profile	PS50157	11.323	73	100	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.3E-6	73	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MNDRESRDFM AVDSFSQLPF IRPVPATAAK EIPRVPSGGA VRLFGIEFPN GGAVAGGGGG 60 GGGGGGGEGR RKFECHYCRR NFPTSQALGG HQNAHKRERQ FTRRAHHPGA GGATYRLRAY 120 APWNGIAPGA GIPVTHFHGG AGPLPRTVDG SPLPFLWGLP AVQGGGGGGM MGVASPAPAP 180 AGRLMYGSAT GVQEQLSLDL R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029123797.1	1e-38	zinc finger protein 8
TrEMBL	A0A2R6QRN8	4e-38	A0A2R6QRN8_ACTCH; Zinc finger protein like
STRING	XP_008798912.1	1e-37	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP834	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	6e-21	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0105100