PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0098500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family YABBY
Protein Properties Length: 144aa    MW: 15914.4 Da    PI: 8.9609
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0098500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY59.61.3e-18766564
           YABBY  5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshld 64
                      +e++Cyv+Cn+Cnt+lav vP   l+++vtv+CGhC +l  ++ +  ++ + a  h+ 
  Spipo0G0098500  7 PPPEHLCYVRCNYCNTVLAVGVPCRRLMETVTVKCGHCNNLSFLSTRPLVHSQCADLHMT 66
                    579*************************************98888888888777766654 PP
2YABBY81.52.5e-257914495159
           YABBY  95 svssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                     +++s+++ s++     +++p v++PPe++ rvPsaynrf+keeiqrika+ Pdi hreafs+a+kn
  Spipo0G0098500  79 KRPSMSMgSSSAAAPETKAPYVVKPPERKHRVPSAYNRFMKEEIQRIKAAHPDIPHREAFSMASKN 144
                     344444445666666778899********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.7E-478144IPR006780YABBY protein
SuperFamilySSF470957.72E-893143IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.106.0E-4102143IPR009071High mobility group box domain
CDDcd013905.71E-6109143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDPASAPPPE HLCYVRCNYC NTVLAVGVPC RRLMETVTVK CGHCNNLSFL STRPLVHSQC  60
ADLHMTLGLG IQGSCNDHKR PSMSMGSSSA AAPETKAPYV VKPPERKHRV PSAYNRFMKE  120
EIQRIKAAHP DIPHREAFSM ASKN
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936439.11e-63protein DROOPING LEAF
SwissprotQ76EJ02e-58YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A1D1XU745e-75A0A1D1XU74_9ARAE; Protein DROOPING LEAF (Fragment)
STRINGVIT_01s0011g00140.t011e-60(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-47YABBY family protein