PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0081900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family DBB
Protein Properties Length: 198aa    MW: 20716.4 Da    PI: 6.0675
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0081900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.22.9e-07446541
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C+ +e+ e++  C  ++  lCe C ++ H        H++v 
  Spipo0G0081900  4 QCDVCERAEATVLCCADEAALCERCDEKVHAAnklagkHQRVA 46
                    7*****************************6678888888775 PP
2zf-B_box22.62.2e-075691437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                    + C+ ++e    +fC +++ llC+ C ++ H    H
  Spipo0G0081900 56 PSCDICQERTGYFFCLEDRALLCRHCDVAVHVAspH 91
                    68******99*******************9844453 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.897147IPR000315B-box-type zinc finger
SMARTSM003363.6E-10147IPR000315B-box-type zinc finger
CDDcd000211.43E-4347No hitNo description
PfamPF006439.5E-6446IPR000315B-box-type zinc finger
SMARTSM003368.7E-1253100IPR000315B-box-type zinc finger
PROSITE profilePS501198.91653100IPR000315B-box-type zinc finger
CDDcd000213.35E-656100No hitNo description
PfamPF006432.2E-55690IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKVQCDVCER AEATVLCCAD EAALCERCDE KVHAANKLAG KHQRVALLSR SSSHIPSCDI  60
CQERTGYFFC LEDRALLCRH CDVAVHVASP HSSSHQRFLI TGVRVALQPV PSGGGSGGAT  120
SNGSMASDSP ASNSSPEKKR FRAAAAAPPP PLELPLEVAA EGALGLQCPW AELLATGDLD  180
QFCYALSSEP GSVADSH*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383444.18e-62PREDICTED: B-box zinc finger protein 22-like
RefseqXP_009383445.18e-62PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM25e-56BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1D1YXI03e-61A0A1D1YXI0_9ARAE; Putative salt tolerance-like protein At1g78600
STRINGGSMUA_Achr11P12670_0013e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-47light-regulated zinc finger protein 1