PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0053500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ZF-HD
Protein Properties Length: 317aa    MW: 33071.5 Da    PI: 7.4848
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0053500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.14.3e-334298358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                    + +Y+eC+kNhAa++Ggha+DGCgEfmps+ ++ +++++l+CaACgCHRnFHRr  +
  Spipo0G0053500 42 QGVYRECMKNHAAAMGGHALDGCGEFMPSPASTpSDPSSLTCAACGCHRNFHRRVLS 98
                    668***************************9999********************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-1644103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-274496IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.9634596IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-304595IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.99E-18178250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-30185251IPR009057Homeodomain-like
TIGRFAMsTIGR015658.6E-25192248IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
QDLKRRPILP ISFSNGALKK HRPVYPIPPP PPPEEQQQQQ QQGVYRECMK NHAAAMGGHA  60
LDGCGEFMPS PASTPSDPSS LTCAACGCHR NFHRRVLSGD LAPHPHHHHH HRRREDREAE  120
EEEEEGDEAV DDDEGHSTPP PPQPLSGGGG AAVQFYSAPH MLMALSAGLP GGPFGGSSSS  180
SLPAATASAA PRKRFRTKFS AEQKERMQEL SEKLGWRMQK RDDAMVEQCC QEIGVSRGVF  240
KVWMHNNKHN FVGGPSSRRS AGAGSGGTGG GAGEATSSSG GAAAGGAHLP AGGNAAVGFN  300
GGPGAGHVIN SSSPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-221932571879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937133.12e-79zinc-finger homeodomain protein 9
SwissprotQ6ER211e-61ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A1D1YXM73e-93A0A1D1YXM7_9ARAE; ZF-HD homeobox protein At4g24660 (Fragment)
STRINGXP_008784223.13e-73(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-22homeobox protein 34