PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0053000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 402aa MW: 44548.2 Da PI: 7.5917

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0053000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.5	8.9e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+kv+++++++ e i+++diyk++PwdLp+ + a+ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++++ Spipo0G0053000 14 MLPGFRFHPTDEELVGFYLKRKVQKRPVSI-ELIRQLDIYKYDPWDLPRLAMAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRAIYAS 107 579***********************99.89***********7667889**********************************98 PP NAM 96 kgel.vglkktLvfykgrapkgektdWvmheyrl 128 +g++ +glkk+Lvfy+gra kg ktdW+mheyrl Spipo0G0053000 108 EGAVcIGLKKSLVFYRGRAAKGIKTDWMMHEYRL 141 554449************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-58	11	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.938	14	173	IPR003441	NAC domain
Pfam	PF02365	3.4E-26	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDAKNDVEKA DEGMLPGFRF HPTDEELVGF YLKRKVQKRP VSIELIRQLD IYKYDPWDLP 60 RLAMAGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRAIYASEGA VCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEYR LPSPADPSSL PSKTVGKEIS ASDSWAICRI FRKTCSVTQR 180 SLSHSWVPPL AEARDYPEEF PVSGNLHCPE LASEGISSCP AETRRSTQPS GSTGHGPPTL 240 SDYSSMDINP YILSSARLTS GITTHPLAEA APSSRCPLDG AAAAAALLQY MQPQLVGDAE 300 RNSSSSMDFS QHRHHHQPQQ LHAFSTIDLL LEMTGNLGRG GEEMGTRKSP DASLQASDGD 360 SHWEALRALA LPFAPPQGRS DAWKVGWERE VLFSIENVKN F*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDAKNDVEKA DEGMLPGFRF HPTDEELVGF YLKRKVQKRP VSIELIRQLD IYKYDPWDLP  60
RLAMAGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRAIYASEGA VCIGLKKSLV  120
FYRGRAAKGI KTDWMMHEYR LPSPADPSSL PSKTVGKEIS ASDSWAICRI FRKTCSVTQR  180
SLSHSWVPPL AEARDYPEEF PVSGNLHCPE LASEGISSCP AETRRSTQPS GSTGHGPPTL  240
SDYSSMDINP YILSSARLTS GITTHPLAEA APSSRCPLDG AAAAAALLQY MQPQLVGDAE  300
RNSSSSMDFS QHRHHHQPQQ LHAFSTIDLL LEMTGNLGRG GEEMGTRKSP DASLQASDGD  360
SHWEALRALA LPFAPPQGRS DAWKVGWERE VLFSIENVKN F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-54	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-54	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-54	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-54	16	179	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	16	179	22	174	NAC domain-containing protein 19
3swm_B	1e-53	16	179	22	174	NAC domain-containing protein 19
3swm_C	1e-53	16	179	22	174	NAC domain-containing protein 19
3swm_D	1e-53	16	179	22	174	NAC domain-containing protein 19
3swp_A	1e-53	16	179	22	174	NAC domain-containing protein 19
3swp_B	1e-53	16	179	22	174	NAC domain-containing protein 19
3swp_C	1e-53	16	179	22	174	NAC domain-containing protein 19
3swp_D	1e-53	16	179	22	174	NAC domain-containing protein 19
4dul_A	8e-54	16	179	19	171	NAC domain-containing protein 19
4dul_B	8e-54	16	179	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937354.1	1e-138	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	2e-96	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1D1Z435	1e-129	A0A1D1Z435_9ARAE; Protein FEZ
STRING	XP_008802608.1	1e-127	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	8e-99	NAC family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0053000

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]