PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0043400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | GATA | ||||||||
Protein Properties | Length: 216aa MW: 22985.4 Da PI: 10.5914 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.6 | 8.5e-19 | 88 | 121 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Spipo0G0043400 88 CSECNTTKTPLWRSGPGGPKSLCNACGIRQRKAR 121 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.28E-13 | 80 | 122 | No hit | No description |
SMART | SM00401 | 3.4E-20 | 82 | 133 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.136 | 82 | 118 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.6E-15 | 86 | 121 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.72E-11 | 87 | 115 | No hit | No description |
Pfam | PF00320 | 1.6E-16 | 88 | 121 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 88 | 113 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGSVATTGDG ESSHKDGDGE ECNPLDSGSG KWMSSKMRFM RKMTGSDKIT SGRPRKNALG 60 SNDHLRQFAE NNVNGDNQIL PNGSIRVCSE CNTTKTPLWR SGPGGPKSLC NACGIRQRKA 120 RRAMAAAAAA VTGGLIPAVA PVVKVRKQKR SPGACAVPFK KRFKCFAAAE TRHKLHFDEL 180 TIALSKNSAF HGVFPQDEKE AAILLMALSC GLIRG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915216.1 | 4e-60 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | A0A1D1YP95 | 1e-72 | A0A1D1YP95_9ARAE; Putative GATA transcription factor 22 (Fragment) | ||||
STRING | XP_008797761.1 | 1e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 3e-34 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0043400 |