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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0019400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ZF-HD | ||||||||
Protein Properties | Length: 221aa MW: 23826.5 Da PI: 7.36 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.8 | 5.4e-33 | 19 | 73 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY+eClkNhAa++Ggh++DGCgEfmps geegt++alkCaAC CHR+FHR+eve Spipo0G0019400 19 TVRYRECLKNHAARIGGHVLDGCGEFMPS-GEEGTTEALKCAACACHRSFHRKEVE 73 79**************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-21 | 18 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.3E-30 | 20 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.7E-30 | 21 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.401 | 22 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.97E-19 | 148 | 215 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 149 | 219 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.9E-27 | 158 | 215 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
GTGPSAASSV PRTLGSGPTV RYRECLKNHA ARIGGHVLDG CGEFMPSGEE GTTEALKCAA 60 CACHRSFHRK EVEGGEEAEG LFAGGHDDEE NNYSGGTTTT ESSSEEMQAH MLAAAGVTPF 120 RQVAHSSHPF QASHAVGMGE MQHYQIAGGP GSASGSAKKR HRTKFTAEQK EMMAEFAERV 180 GWRMQKQDDG ALERFCREAG VSRQVFKVWM HNNKNVVLKS K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 4e-25 | 158 | 214 | 17 | 73 | ZF-HD homeobox family protein |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A200R7P2 | 3e-59 | A0A200R7P2_9MAGN; Homeobox domain | ||||
STRING | XP_010539899.1 | 2e-59 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 5e-50 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0019400 |