PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0407s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | WRKY | ||||||||
Protein Properties | Length: 703aa MW: 74206 Da PI: 7.1967 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.7e-31 | 350 | 406 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse++rsYY+Ct+a+Cp+kkkvers+ d++v+ei+Y+geHnh Sphfalx0407s0004.1.p 350 EDGYNWRKYGQKQVKGSEYTRSYYKCTQAHCPMKKKVERSH-DGQVTEIVYKGEHNHA 406 7****************************************.***************7 PP | |||||||
2 | WRKY | 103.4 | 1.2e-32 | 524 | 582 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct gCpv+k+ver+++d k+v++tYeg+Hnh+ Sphfalx0407s0004.1.p 524 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASTDVKAVITTYEGKHNHD 582 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.86 | 344 | 408 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-27 | 347 | 408 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-24 | 347 | 408 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-33 | 349 | 407 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-24 | 350 | 405 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-37 | 509 | 584 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-29 | 516 | 584 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.193 | 519 | 584 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 524 | 583 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-25 | 525 | 582 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MLRKPTPSRP QMTTAAATRV CYNPEGVVAY RGIESPVSSM VSGFLADQQE VEMDSRSFSH 60 LLAGAISSAS PASGDRADEQ GEALDSAATG SPRLGGEASS SVGGGGAGGS FADRLAARGA 120 ANTAGGGTAE GGGGGGSAPR PPSSGRARSL PPSRIPIPRP AGYLTIPPGL SPTTLFDSSP 180 VLLPTSQSEP SPTTGAFPLG VSTFFNTSSG FPKPIMAIDP SSKDKSTADQ GFVFKPVPQN 240 AMSRLAGRSI FGASQQQAHV LTEMHQAHVQ QVAPSSSALG ASAGLPLVHT TMPFSVPLDV 300 PSFQAAHVQA HVQQQQQQIA PDSEQNSQAS EQDHLLPPTS ITAFPERASE DGYNWRKYGQ 360 KQVKGSEYTR SYYKCTQAHC PMKKKVERSH DGQVTEIVYK GEHNHAKPQP TRRLALNGAA 420 GFVSNVKNEG GGVEQDVMDS SRASHLVSSL SFGATGAPEP LSPSTSDDEG QEGSKLSAED 480 GDDDEPDSKR RRKDKKVLEA VPTSSRTIRE PRVVVQTTSD VDILDDGYRW RKYGQKVVKG 540 NPHPRSYYKC TNVGCPVRKH VERASTDVKA VITTYEGKHN HDVPSARNSS NDTLLQTTTP 600 AVPAATSLQD QGSQFNHNLG QLLEDGSCKV EISAVDVDLG VRSGMGANGD MPVSTSLGHS 660 DFRDGRAVQG RDSFVHRATF AARPKQEQPE STSQTTLIPS CT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-37 | 350 | 585 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-37 | 350 | 585 | 8 | 78 | Probable WRKY transcription factor 4 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 489 | 494 | RRRKDK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368161.1 | 0.0 | WRKY transcription factor SUSIBA2-like isoform X3 | ||||
TrEMBL | A0A2K1L2S7 | 0.0 | A0A2K1L2S7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S135_80V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-88 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0407s0004.1.p |