 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sphfalx0402s0002.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
| Family |
C3H |
| Protein Properties |
Length: 290aa MW: 32490.7 Da PI: 7.1585 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sphfalx0402s0002.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.3 | 5.5e-08 | 24 | 44 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C f++r G C+yG+rC++ H+
Sphfalx0402s0002.2.p 24 VCTFYQR-GLCSYGSRCRYEHV 44
6999999.***********997 PP
|
| 2 | zf-CCCH | 22.6 | 1.9e-07 | 126 | 146 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C fa+ G+C++Gd+C+ +Hg
Sphfalx0402s0002.2.p 126 ICA-FAAAGICPRGDNCPQIHG 146
676.*****************9 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 8.089 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.577 | 19 | 46 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.2E-5 | 19 | 45 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.06E-5 | 20 | 43 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 23 | 43 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.2E-6 | 24 | 44 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.89E-5 | 118 | 145 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.418 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0011 | 122 | 147 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.6E-5 | 126 | 146 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 1.93E-8 | 173 | 254 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 1.7E-6 | 185 | 248 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| PROSITE profile | PS50089 | 8.963 | 190 | 248 | IPR001841 | Zinc finger, RING-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MHGACFKRED CMFSHSWSDQ ASQVCTFYQR GLCSYGSRCR YEHVKLSRPV SNNPLPPLPR 60
PSVVALNSSP DTSRAEESSS NTRTQSAWQL TEGKANLGPR FLEEDDEKDV EEIDMPTSND 120
PSEIPICAFA AAGICPRGDN CPQIHGDLCP TCGKHCLHPF RPSERDNHRQ QRERNQKKLE 180
TLRKSQDIEC SVCLERVLSK PTVAERKFGL MSGRDHPFCV GCIRGWRSGS HAPGMDIDTV 240
VRACPVCQVT SHFIVPSVVW YSSSEEKEDI INGYKNKLSI CLEMEVGRR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Sahi VP, et al.
A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
Plant Signal Behav, 2012. 7(3): p. 375-81
[PMID:22499205] - Wadekar HB,Sahi VP,Morita EH,Abe S
MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
Planta, 2013. 237(4): p. 1083-95
[PMID:23262670]
|
