PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0329s0011.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Nin-like

Protein Properties

Length: 1338aa MW: 144116 Da PI: 6.0061

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0329s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.9e-28	856	906	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Sphfalx0329s0011.1.p 856 EKTIGLSVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 906 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.904	839	926	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-25	859	906	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-21	1224	1313	No hit	No description
PROSITE profile	PS51745	18.98	1229	1311	IPR000270	PB1 domain
SMART	SM00666	7.8E-13	1229	1311	IPR000270	PB1 domain
Pfam	PF00564	6.6E-12	1230	1309	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.7E-19	1230	1309	No hit	No description
CDD	cd06407	8.33E-31	1230	1309	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1338 aa Download sequence Send to blast
MDVSQASEQR LQSSCISRWR SADFTPAFGQ ELLSSSAGGG GGGVAVAAAG AASSAAGDCK 60 LEMDDDTILC DLMDLDPLPG ETWMGNNQSD FNVIPYVNFS QSSSFSPSLS SSSSAAATLL 120 YPHCGVSSAY LLQALDEHSA LALMEHQVHG SAAEPNMGSS TTAASICSEP GVEFSASTFM 180 NNPAAAGGGF RGERANLSQM FLSPHEMMMP RTTPAEESDP LVSETQCCGG GEKVVEEEEE 240 VGGSNNPAGV VERRMIAPAA IEGKMARSCE STAAADMGNY NSSRRPMIRT DSTPLSLRER 300 LLQALRYIGR SRPDALVQVW MPVTQGNNKL FLTTRDQPYV LERKNDQLWS FRSVSEKYDF 360 PAADNNNKES TGAGGGGDRG FFCCTGDLPV RVFLNQAPEW TPNVQLYSSA EYLRVEEAQR 420 YDVRGTVSVP VLNPVSRTCL AVIELVTKTE RVQYRPEIDI ICRALQAVNL ACSDGSEPPA 480 AAPPEMMWSQ SRQAVLAEIA EVLTAVCETH KLPIAQTWVP ASQYNSSAAN VLVHNGSKRV 540 RFDIDDGCNC YNTCLSSRKS MSLRTGDGPC YVSDGRMWGF RRACLEHAME KGQGVPGKAF 600 ASNRPFFDKD VKGYSKTEYP LGHYAKWFGL SAAVAIRLRS IHTGSDDFIL EFFLPRSCVE 660 SQEQQLMLNS LSITMQRICR SLRTVTDKEL EEEKEAAAAT AALAAADADA ECKSLKLLEA 720 KEEQDLDCVP PGHCGFGPPT PVMTHEVKSH CLLGHQQHQQ RKSYLQQQQQ QHPLQYNQPA 780 DHHINNTGEV NDSIQHQHPS SGLHHVQLSC QTSDELSLDL GAGGTSMGRE LASVTCSGQD 840 TALHRRRADR RRGTTEKTIG LSVLQQYFAG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS 900 RKINKVSRSL KKLQGVIDSV QGADGALRIN TLTGNIASVA AAAVTGIHIG KDGPPPSQGS 960 WSVSWATHAP IDRDSKEHLV TSKGPAADLL AVPKEEDNKK PTVRSAEEDT IVGLANEGNL 1020 MTSADDACGL QEQEEHRNSD QNSGGSLGLG CVCSSQGGSG LSPLSQGTDE ENVFGTVTHS 1080 PQSLSPLLNG SCGRNHCTSA ACRPPELMVS RSFRDGSGRS RLSDLKRHAN SKAGVESQLH 1140 ESPRVLTVPK GGLLSCDREE GPVSSSNYTF GEGGNEEKEV TGRSGLCALD SPQFGSSTAH 1200 GISDCSSPSS VGGTSQKMIW PPRSDSTSAI TIKATVGTDT VRFKFPLGAG YLDLREEVRR 1260 RVKVEGHSFD LKYLDDDEEW MLLACEADLQ ECLEVTRVSQ RHAIKLMVRC SSGSRSCMAS 1320 SGIVNTGAEE KPNKIYS*

Sequence ? help Back to Top

Protein Sequence Length: 1338 aa Download sequence Send to blast

MDVSQASEQR LQSSCISRWR SADFTPAFGQ ELLSSSAGGG GGGVAVAAAG AASSAAGDCK  60
LEMDDDTILC DLMDLDPLPG ETWMGNNQSD FNVIPYVNFS QSSSFSPSLS SSSSAAATLL  120
YPHCGVSSAY LLQALDEHSA LALMEHQVHG SAAEPNMGSS TTAASICSEP GVEFSASTFM  180
NNPAAAGGGF RGERANLSQM FLSPHEMMMP RTTPAEESDP LVSETQCCGG GEKVVEEEEE  240
VGGSNNPAGV VERRMIAPAA IEGKMARSCE STAAADMGNY NSSRRPMIRT DSTPLSLRER  300
LLQALRYIGR SRPDALVQVW MPVTQGNNKL FLTTRDQPYV LERKNDQLWS FRSVSEKYDF  360
PAADNNNKES TGAGGGGDRG FFCCTGDLPV RVFLNQAPEW TPNVQLYSSA EYLRVEEAQR  420
YDVRGTVSVP VLNPVSRTCL AVIELVTKTE RVQYRPEIDI ICRALQAVNL ACSDGSEPPA  480
AAPPEMMWSQ SRQAVLAEIA EVLTAVCETH KLPIAQTWVP ASQYNSSAAN VLVHNGSKRV  540
RFDIDDGCNC YNTCLSSRKS MSLRTGDGPC YVSDGRMWGF RRACLEHAME KGQGVPGKAF  600
ASNRPFFDKD VKGYSKTEYP LGHYAKWFGL SAAVAIRLRS IHTGSDDFIL EFFLPRSCVE  660
SQEQQLMLNS LSITMQRICR SLRTVTDKEL EEEKEAAAAT AALAAADADA ECKSLKLLEA  720
KEEQDLDCVP PGHCGFGPPT PVMTHEVKSH CLLGHQQHQQ RKSYLQQQQQ QHPLQYNQPA  780
DHHINNTGEV NDSIQHQHPS SGLHHVQLSC QTSDELSLDL GAGGTSMGRE LASVTCSGQD  840
TALHRRRADR RRGTTEKTIG LSVLQQYFAG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS  900
RKINKVSRSL KKLQGVIDSV QGADGALRIN TLTGNIASVA AAAVTGIHIG KDGPPPSQGS  960
WSVSWATHAP IDRDSKEHLV TSKGPAADLL AVPKEEDNKK PTVRSAEEDT IVGLANEGNL  1020
MTSADDACGL QEQEEHRNSD QNSGGSLGLG CVCSSQGGSG LSPLSQGTDE ENVFGTVTHS  1080
PQSLSPLLNG SCGRNHCTSA ACRPPELMVS RSFRDGSGRS RLSDLKRHAN SKAGVESQLH  1140
ESPRVLTVPK GGLLSCDREE GPVSSSNYTF GEGGNEEKEV TGRSGLCALD SPQFGSSTAH  1200
GISDCSSPSS VGGTSQKMIW PPRSDSTSAI TIKATVGTDT VRFKFPLGAG YLDLREEVRR  1260
RVKVEGHSFD LKYLDDDEEW MLLACEADLQ ECLEVTRVSQ RHAIKLMVRC SSGSRSCMAS  1320
SGIVNTGAEE KPNKIYS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397373.1	0.0	protein NLP1-like isoform X1
Refseq	XP_024397374.1	0.0	protein NLP1-like isoform X2
TrEMBL	A0A2K1JCK3	0.0	A0A2K1JCK3_PHYPA; Uncharacterized protein
STRING	PP1S250_18V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-88	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Sphfalx0329s0011.1.p