PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0328s0011.14.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 528aa MW: 58136 Da PI: 8.8137

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0328s0011.14.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3e-09	451	482	4	38
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKl 38 hn Er RRdriN+++ L+ ++P++ +++Kl Sphfalx0328s0011.14.p 451 VHNHSERCRRDRINEKMKALQMVIPNC---NKTKL 482 5*************************9...89987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.78E-7	443	482	No hit	No description
SuperFamily	SSF47459	4.06E-8	444	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.21	447	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-8	451	483	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	451	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MEGQGSNSSK SHWHPGYAPH WNSGEVSQDG VRVLKPSVPS ANKDARLDTV VSETAAEMTV 60 VTNINRHDDK MVSWLQYPLH GSLERKYCSD VFGELPSSNI QVVKESFVGQ EPRCLPHISV 120 PNNIAINPAV NKATCAEVAM TLGAGRAAGI IPQRGAEAFS KVRTLKWQPD SLTPNSSRGF 180 GVYSSASQAP PRTYPPASRP LLAPFTPLKP QPRASMHNMQ PDSARKLAHF DFLDFSRSAA 240 RMKNLQGVGM LPDTPSNMLC TQPLAEVNVE ASTSSWSTFA DSSTAGTGQM GSQKNIEIHV 300 QGTKSQQQIP GVDDEGMVPI SVTKKEVEAS VLESEAMIWK TRLPVPIPVI RKEVETVLEG 360 EAVLCKTKPT EQEVLQMSNV AAGHGNSAGM PKEASTSNKR KVIVTEELEC QSEDCSSKMA 420 FPIDGEEQSA DFKKPPEGRA STSKRTRTAE VHNHSERCRR DRINEKMKAL QMVIPNCNKT 480 KLHCWLRRLN TSRCFSYNFR WCPAQGRAYH QWSCPLVCNI CRCKPRR*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MEGQGSNSSK SHWHPGYAPH WNSGEVSQDG VRVLKPSVPS ANKDARLDTV VSETAAEMTV  60
VTNINRHDDK MVSWLQYPLH GSLERKYCSD VFGELPSSNI QVVKESFVGQ EPRCLPHISV  120
PNNIAINPAV NKATCAEVAM TLGAGRAAGI IPQRGAEAFS KVRTLKWQPD SLTPNSSRGF  180
GVYSSASQAP PRTYPPASRP LLAPFTPLKP QPRASMHNMQ PDSARKLAHF DFLDFSRSAA  240
RMKNLQGVGM LPDTPSNMLC TQPLAEVNVE ASTSSWSTFA DSSTAGTGQM GSQKNIEIHV  300
QGTKSQQQIP GVDDEGMVPI SVTKKEVEAS VLESEAMIWK TRLPVPIPVI RKEVETVLEG  360
EAVLCKTKPT EQEVLQMSNV AAGHGNSAGM PKEASTSNKR KVIVTEELEC QSEDCSSKMA  420
FPIDGEEQSA DFKKPPEGRA STSKRTRTAE VHNHSERCRR DRINEKMKAL QMVIPNCNKT  480
KLHCWLRRLN TSRCFSYNFR WCPAQGRAYH QWSCPLVCNI CRCKPRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	4e-18	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0328s0011.14.p