PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0328s0011.10.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 649aa MW: 70838.6 Da PI: 7.8028

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0328s0011.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49	1.1e-15	451	497	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er RRdriN+++ L+ ++P++ K +Ka+ L +AveYIk+Lq Sphfalx0328s0011.10.p 451 VHNHSERCRRDRINEKMKALQMVIPNC-----NKTDKASLLAEAVEYIKMLQ 497 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.66E-16	443	501	No hit	No description
SuperFamily	SSF47459	1.7E-18	444	509	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.041	447	496	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-17	451	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-13	451	497	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-17	453	502	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MEGQGSNSSK SHWHPGYAPH WNSGEVSQDG VRVLKPSVPS ANKDARLDTV VSETAAEMTV 60 VTNINRHDDK MVSWLQYPLH GSLERKYCSD VFGELPSSNI QVVKESFVGQ EPRCLPHISV 120 PNNIAINPAV NKATCAEVAM TLGAGRAAGI IPQRGAEAFS KVRTLKWQPD SLTPNSSRGF 180 GVYSSASQAP PRTYPPASRP LLAPFTPLKP QPRASMHNMQ PDSARKLAHF DFLDFSRSAA 240 RMKNLQGVGM LPDTPSNMLC TQPLAEVNVE ASTSSWSTFA DSSTAGTGQM GSQKNIEIHV 300 QGTKSQQQIP GVDDEGMVPI SVTKKEVEAS VLESEAMIWK TRLPVPIPVI RKEVETVLEG 360 EAVLCKTKPT EQEVLQMSNV AAGHGNSAGM PKEASTSNKR KVIVTEELEC QSEDCSSKMA 420 FPIDGEEQSA DFKKPPEGRA STSKRTRTAE VHNHSERCRR DRINEKMKAL QMVIPNCNKT 480 DKASLLAEAV EYIKMLQLQL QMVSSTGKSI PPMVMPSGMQ HLQMQAPEMM DMSSLGMGMA 540 MRMGMDPGMS LRDMAASNSG QAGMLLPSPA VAKPSHNCYI PVTSLSMVNV HNLGVHNLNA 600 MEPLNDHLTC QHQPPQIPKQ QQQYQQREQQ QQHHHHQSTN MGGVKPPQ*

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MEGQGSNSSK SHWHPGYAPH WNSGEVSQDG VRVLKPSVPS ANKDARLDTV VSETAAEMTV  60
VTNINRHDDK MVSWLQYPLH GSLERKYCSD VFGELPSSNI QVVKESFVGQ EPRCLPHISV  120
PNNIAINPAV NKATCAEVAM TLGAGRAAGI IPQRGAEAFS KVRTLKWQPD SLTPNSSRGF  180
GVYSSASQAP PRTYPPASRP LLAPFTPLKP QPRASMHNMQ PDSARKLAHF DFLDFSRSAA  240
RMKNLQGVGM LPDTPSNMLC TQPLAEVNVE ASTSSWSTFA DSSTAGTGQM GSQKNIEIHV  300
QGTKSQQQIP GVDDEGMVPI SVTKKEVEAS VLESEAMIWK TRLPVPIPVI RKEVETVLEG  360
EAVLCKTKPT EQEVLQMSNV AAGHGNSAGM PKEASTSNKR KVIVTEELEC QSEDCSSKMA  420
FPIDGEEQSA DFKKPPEGRA STSKRTRTAE VHNHSERCRR DRINEKMKAL QMVIPNCNKT  480
DKASLLAEAV EYIKMLQLQL QMVSSTGKSI PPMVMPSGMQ HLQMQAPEMM DMSSLGMGMA  540
MRMGMDPGMS LRDMAASNSG QAGMLLPSPA VAKPSHNCYI PVTSLSMVNV HNLGVHNLNA  600
MEPLNDHLTC QHQPPQIPKQ QQQYQQREQQ QQHHHHQSTN MGGVKPPQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-32	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0328s0011.10.p