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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0321s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARR-B | ||||||||
Protein Properties | Length: 755aa MW: 81127 Da PI: 5.5497 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.6 | 5.8e-28 | 250 | 303 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv av+qL G ekA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Sphfalx0321s0010.1.p 250 KPRVVWSVDLHQQFVCAVNQL-GVEKAVPKRILELMGVQGLTRENVASHLQKYRL 303 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76 | 1.4e-25 | 70 | 178 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl+vdD+++ + +l+++l++ y +v+++ +++alell++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a+g+ + + Sphfalx0321s0010.1.p 70 VLVVDDDRICLVVLERMLRRCAY-QVTTCWRATKALELLRANKdaFDVVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSANGSVSAVM 156 89*********************.***************888889**********************6644.8**************** PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + + Ga d+l Kp+ +eel++ Sphfalx0321s0010.1.p 157 KGITHGACDYLLKPVRIEELRN 178 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.69E-37 | 67 | 192 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.9E-43 | 67 | 202 | No hit | No description |
SMART | SM00448 | 1.4E-32 | 68 | 180 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.471 | 69 | 184 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.0E-23 | 70 | 179 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.01E-26 | 71 | 183 | No hit | No description |
SuperFamily | SSF46689 | 1.09E-18 | 247 | 307 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-29 | 249 | 308 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.736 | 249 | 306 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 6.4E-24 | 250 | 303 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-8 | 252 | 302 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 755 aa Download sequence Send to blast |
MGLAEQRPAT ATLEQQQKQK QEGEEQQGRQ QQQQQISDAE SAGKTASGTS NDSYTKMDPP 60 GDEFPVGMRV LVVDDDRICL VVLERMLRRC AYQVTTCWRA TKALELLRAN KDAFDVVISD 120 VHMPDMDGFK LLEHVGLEMD LPVIMMSANG SVSAVMKGIT HGACDYLLKP VRIEELRNIW 180 QHVVRKRRNV PKELDKSVSA DGVERQNGEC ASSANDTTDA NWKLSKKRKE AKELEDDNEL 240 DGDDPSCLKK PRVVWSVDLH QQFVCAVNQL GVEKAVPKRI LELMGVQGLT RENVASHLQK 300 YRLYLRRLTS QQGGDPTFGP GSFDFSSCDG DFRALAGGSG QLPDQTLAAL RAGLLTGSRA 360 NDFAISGDLD TSSLLQFADM QGSTNVGPVV RPQMSSAPLI GGQTLLFQGV AGGLDLDRLA 420 QPHHVAALRQ PGVMDEATAL AANIQQQVVE TSGVGTLSTS LPGRAQPENA LIMQLLQQRA 480 GADNVSSVRT GGLLPLGASC LDTRGLSDFL GTGRRVTGPP PGSMVATISN ALDALIQPNT 540 DVNYPGQSSR VVPVTFPPSG MGTGSPVINE RPNEATMRAN LLPSRYAGNG CGQGMSQNNI 600 RSGWSGPQKG LTSLHDELGL PQVARFDPHC DYNHVATSNQ LSGGVASGQH APGMNISSRL 660 AADRAVVGPL YNGGNHQNGS EASTTDSNEK QRKDQRRADS VYSKLECQLL STDASSDDLF 720 NMVFNKQQSQ AGNMSFLESD LGSDGYVLDG LFVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-21 | 249 | 309 | 4 | 64 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.1 | 1e-104 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0321s0010.1.p |