PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0287s0014.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 374aa    MW: 40519.7 Da    PI: 6.2319
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0287s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.64e-06343438
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                          + C+ ++   +  +C+ +  +lC  C  + H g       H+
  Sphfalx0287s0014.1.p  3 KPCDACHASSAVVYCRADAAYLCVGCDGKVH-GanklasrHE 43
                          67*****999*****************9999.4466666676 PP
2zf-B_box21.25.8e-074589341
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           ++C+ +e  ++   C+ +   lC +C + +H+       H++v 
  Sphfalx0287s0014.1.p 45 VWMCEVCELAPAVVTCKADAAALCFSCDTDIHSAnplarrHERVA 89
                          689*****************************6688888898875 PP
3CCT71.71.8e-24308351144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RYkeKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  Sphfalx0287s0014.1.p 308 REARVMRYKEKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 351
                           9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.471147IPR000315B-box-type zinc finger
CDDcd000211.80E-6447No hitNo description
PROSITE profilePS501199.8554390IPR000315B-box-type zinc finger
PfamPF006432.0E-54589IPR000315B-box-type zinc finger
CDDcd000215.25E-64688No hitNo description
SMARTSM003362.6E-84890IPR000315B-box-type zinc finger
PfamPF062031.7E-18308350IPR010402CCT domain
PROSITE profilePS5101716.777308350IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPKPCDACHA SSAVVYCRAD AAYLCVGCDG KVHGANKLAS RHERVWMCEV CELAPAVVTC  60
KADAAALCFS CDTDIHSANP LARRHERVAV VPFFECPNVA KMVHINAMNV AVPVIDCCDV  120
IKADNETSAV EASWLLQNPK RPGEALMKDD DLGLLSSSYL ERQYSAKSQK EKFKTKAELY  180
EAADLFPDVD PYLDLDYAAA MGGSTTQVGA DSLVPVHNSS STADNHGQPS LIHAQSHVTS  240
YSELPQDNGY NHGASSLSHS ISSSSIDAGV VPDSSLSDIS PPTEGSPGML EYPAPTVPAG  300
GPDETMAREA RVMRYKEKRK NRKFEKTIRY ASRKAYAESR PRIKGRFAKR TDSDTEFMFP  360
MVPDVSFGVV PTY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369143.11e-129zinc finger protein CONSTANS-LIKE 4-like
TrEMBLQ5H7P01e-127Q5H7P0_PHYPA; CONSTANS-like 1
STRINGPP1S371_27V6.11e-128(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-80CONSTANS-like 4