PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0273s0017.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Protein Properties

Length: 321aa MW: 35149.8 Da PI: 9.423

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0273s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.1	1e-15	149	228	12	98
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 s+ +++p +f+++hg++ + + +l+de+g +Wev + +++s + l++GWk+F++ + + +gD + F+l+ +s f v++++ Sphfalx0273s0017.1.p 149 HSSGIWIPLEFMKDHGHQ--IGNEAVLQDEHGMTWEVSV--SRGS-WSGLRAGWKKFADNHTMAVGDKIEFTLIADSVF--AVRIIS 228 45679********988..7789***********..6666.678***********************99999..888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-18	133	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.93E-17	134	228	No hit	No description
SuperFamily	SSF101936	9.42E-18	134	226	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	6.1E-12	136	230	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.562	138	230	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.5E-13	149	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MVTRAGGSFA AVPAMVDASV KRGASEEKTR ISNLMDAVMT ASGGRTRISV LMDAVMKASE 60 ADDADVFSEE CCISHVLSSD AKKNLERSKK KVYSEGSLVP NEKSIMAKVR VQQNCKAQEI 120 QQQQQQLIQS LCPPTFTKTV LAGSLAASHS SGIWIPLEFM KDHGHQIGNE AVLQDEHGMT 180 WEVSVSRGSW SGLRAGWKKF ADNHTMAVGD KIEFTLIADS VFAVRIISET NQKPISHISR 240 LCKDSHETVY KGISRKRSVR YVSSRSSHGS ALEDEAESHN HQFHAGIVIG TSSNSCKRAR 300 SKRCWNYKQY SKEGSQAGIK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	1e-07	B3 family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0273s0017.1.p