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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0259s0019.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARR-B | ||||||||
Protein Properties | Length: 768aa MW: 82786.4 Da PI: 5.0965 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.8 | 4.9e-28 | 265 | 318 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Sphfalx0259s0019.1.p 265 KPRVVWSVDLHQQFVCAVNQL-GVDKAVPKRILELMGVQGLTRENVASHLQKYRL 318 79*******************.********************************8 PP | |||||||
2 | Response_reg | 74.6 | 3.8e-25 | 85 | 193 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl+vdD+++ + +l+++l++ y +v+++ ++++alell++ + +D+++ D+ mp+mdG++ll+ e++lp+i+++a+g+ + + Sphfalx0259s0019.1.p 85 VLVVDDDRTCLVILEKMLRRCAY-QVTTCWKATKALELLRAYKdaFDVVISDVIMPDMDGFKLLELVGL-EMDLPVIMMSANGAVSAVM 171 89*********************.***************999999*******************87754.558**************** PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + + Ga d+l Kp+ +eel++ Sphfalx0259s0019.1.p 172 KGITHGACDYLLKPVRIEELRN 193 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.18E-35 | 82 | 207 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.6E-42 | 82 | 218 | No hit | No description |
SMART | SM00448 | 1.2E-30 | 83 | 195 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.805 | 84 | 199 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.1E-22 | 85 | 194 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.25E-25 | 86 | 198 | No hit | No description |
SuperFamily | SSF46689 | 5.38E-19 | 262 | 322 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 264 | 323 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.164 | 264 | 321 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.5E-24 | 265 | 318 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-8 | 267 | 317 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MGPPPPPGEQ RSTTATVELH QQHQQQEIKQ KHCGREEQQE GRQQQKQPSD ADSNGKTTTT 60 SDTSNDDSYT KMDPPGNDFP AGMRVLVVDD DRTCLVILEK MLRRCAYQVT TCWKATKALE 120 LLRAYKDAFD VVISDVIMPD MDGFKLLELV GLEMDLPVIM MSANGAVSAV MKGITHGACD 180 YLLKPVRIEE LRNIWQHVVR KKRNVSKEVE RSASADGGEH QNGEYASSGN DSTDANWKLS 240 RKRREAKEPD DDTDLDGDDP SCLKKPRVVW SVDLHQQFVC AVNQLGVDKA VPKRILELMG 300 VQGLTRENVA SHLQKYRLYL RRLTNQQGGD ATFGPGAFDF SSCDGDFQLL AGGSGQMPPV 360 QTLAALRADL LSGSGANDFG GDLDTATILQ FADLQGSANV GNVGPTMRPQ MSSPSPVGDR 420 TLLFQGVTDL DQLSQPHRVS AIRQQPGSID EATALTASIQ QHIVETSGLQ SLNTNLPGRA 480 QPENALIMQL LQQRAGADNT GRAGGFLPLV GTELDTRALS DVLGTGRRLI GPPPGSMVAT 540 VSSALDALIR PNSNANYLGQ STGIVPSTFP PAGMGTGPHV INESPNEATV EVSFLQSQNT 600 GNGCGQIVNQ NNIRSGWSAL QTGLSSFHDE LGLPQVARFS SHYDYNHIVT ANNLGSEGVV 660 SGQGGSELVF PSRLAADRAV IGPVHNGSGH CNYRGSETAD SNDKWMRDER RAGSVYSKLE 720 RPFSSTDASS DDLFNMVFNK QPQVGSMNLL EGDLGSDGYV LDGLFVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-20 | 264 | 324 | 4 | 64 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-103 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0259s0019.1.p |