PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0250s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bZIP
Protein Properties Length: 416aa    MW: 45206.1 Da    PI: 6.9166
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0250s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.97.7e-12289347563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l +l+k ++ l++e+
  Sphfalx0250s0004.1.p 289 KRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQKDSSGLTTEN 347
                           9***************************************************9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-17285349IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.07287350IPR004827Basic-leucine zipper domain
PfamPF001701.5E-10289347IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-11289339No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-11289343No hitNo description
CDDcd147031.28E-25290339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDGLGDGYEA FVERLQSDFA ATSAAKSSGT NTNSNVATHP PHPSQSQRHQ SRYVGYPSPT  60
HAFTVKRETS PSVSESSTRT KDSYSVDVPM QDVTSPGPST ASGPGRLPTP AQNFSNDVNQ  120
MPDTPPRQRG HRRAQSEIAF RLPEDVSFER DLGFHCSEMP ALSDDTEDLF SMYIDMEQIN  180
SFSATSGVSG PKASGDRGIL PLVPPSYPST CPSVDGVPAV SNGGRSCIAI ASGSSIASDI  240
RRARHQHSNS MDGSTSFKHD LLAGEFDGVD VKKVMSSDKL ADIALIDPKR AKRILANRQS  300
AARSKERKMR YISELERKVQ TLQTEATTLS AQLTMLQKDS SGLTTENSEL KLRLQSMEQQ  360
AQLRDALNDA LREEVQRLKV ATGQLTNSSA QILGGQHFYH LPNQPLNSQQ LQQLQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356505.10.0transcription factor RF2a-like
RefseqXP_024356506.10.0transcription factor RF2a-like
SwissprotQ040887e-84POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2R6XND50.0A0A2R6XND5_MARPO; Uncharacterized protein
STRINGPP1S20_118V6.10.0(Physcomitrella patens)
STRINGPP1S20_119V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.14e-86bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]