PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0230s0015.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HB-other

Protein Properties

Length: 504aa MW: 55209.4 Da PI: 7.8861

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0230s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.3	7.1e-05	429	453	23	47
SS--HHHHHHHHHHCTS-HHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvW 47 yps+e ++eLA+++gL +qV++W Sphfalx0230s0015.1.p 429 AYPSKEVKTELAESTGLHFSQVSNW 453 7************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.248	399	464	IPR001356	Homeobox domain
SMART	SM00389	0.0011	401	468	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-6	403	470	IPR009057	Homeodomain-like
CDD	cd00086	1.45E-4	403	453	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-11	406	463	IPR009057	Homeodomain-like
Pfam	PF05920	8.7E-7	425	454	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MNSGGFRRIR LSSNLTLRFR RSPMPADICN AEVTKRGGAD ADWELESFSD IYPELFQSDH 60 NTYYSCLRID DQEEESSDSS CFTRLPDLDC LAYQIWEQED EEVVDSFLLP ISISSVCTEG 120 IVNDMRYGGL FLESDLEHAC SLQQQNLLQT APEFALGGTA ARENIGRCCR AEFAIARNAY 180 YEQRENLRSV TPVASSQLSL ALADDAQNAA SGRHVATDEI MESFSTETFV ESCLVAVSPS 240 ASSSLEQQPP AATKFPMISH SSETSSRASS NTSALHKLPP PAAARSVDDA HHHHRGNNNN 300 KRTRKRLVLK KKAAAVDAIA DTCDSDSKRL AANGKHTKTS SSAAVTYQDS TATMYIATRQ 360 REKTDQQAAG ASSSSSLQRS RDHVNENKSL AKKKARKGKR HHRNGTRLPA AAVAMLQDWT 420 AANCTVDSAY PSKEVKTELA ESTGLHFSQV SNWLSCWRDK HNLQRQMRNL KAMVAIAGGT 480 STRAQLKTMA TAGGTSTRAQ LRT*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MNSGGFRRIR LSSNLTLRFR RSPMPADICN AEVTKRGGAD ADWELESFSD IYPELFQSDH  60
NTYYSCLRID DQEEESSDSS CFTRLPDLDC LAYQIWEQED EEVVDSFLLP ISISSVCTEG  120
IVNDMRYGGL FLESDLEHAC SLQQQNLLQT APEFALGGTA ARENIGRCCR AEFAIARNAY  180
YEQRENLRSV TPVASSQLSL ALADDAQNAA SGRHVATDEI MESFSTETFV ESCLVAVSPS  240
ASSSLEQQPP AATKFPMISH SSETSSRASS NTSALHKLPP PAAARSVDDA HHHHRGNNNN  300
KRTRKRLVLK KKAAAVDAIA DTCDSDSKRL AANGKHTKTS SSAAVTYQDS TATMYIATRQ  360
REKTDQQAAG ASSSSSLQRS RDHVNENKSL AKKKARKGKR HHRNGTRLPA AAVAMLQDWT  420
AANCTVDSAY PSKEVKTELA ESTGLHFSQV SNWLSCWRDK HNLQRQMRNL KAMVAIAGGT  480
STRAQLKTMA TAGGTSTRAQ LRT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Sphfalx0230s0015.1.p