PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0219s0009.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 364aa    MW: 39341.1 Da    PI: 6.5129
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0219s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.44.9e-18196250256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0219s0009.1.p 196 RKKLRLSKEQSALLEESFKDHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 250
                           778899***********************************************98 PP
2HD-ZIP_I/II124.54.8e-40196285191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr 
  Sphfalx0219s0009.1.p 196 RKKLRLSKEQSALLEESFKDHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLSEENRRLQKELQELR- 283
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           +l
  Sphfalx0219s0009.1.p 284 AL 285
                           55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-18180250IPR009057Homeodomain-like
SuperFamilySSF466897.27E-18188253IPR009057Homeodomain-like
PROSITE profilePS5007117.329192252IPR001356Homeobox domain
SMARTSM003891.2E-15194256IPR001356Homeobox domain
CDDcd000861.02E-16196253No hitNo description
PfamPF000462.5E-15196250IPR001356Homeobox domain
PROSITE patternPS000270227250IPR017970Homeobox, conserved site
PfamPF021837.4E-11252286IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.7E-19252295IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLLSGGTGSL RIEMERMRVV ASSSSSLGLT VESGGGYGVL QQRPIWQSPP VQLDLLPMIS  60
SHSSETSTPA APASSVTNNP FSSWQMLASR TNSARSGYDD GEVETFSSGG DGGAAAVGVS  120
IARGDLDMNQ LPSTTDCDEE ETVVLSSPSS TCMKREREKL HVFDLEQDMR TAGGCTDLSV  180
ERGASDDEAD GGSTTRKKLR LSKEQSALLE ESFKDHSTLN PKQKNALAKQ LNLRPRQVEV  240
WFQNRRARTK LKQTEVDCEV LKRCCENLSE ENRRLQKELQ ELRALKLAVV ATTPRACTAA  300
AVIDAHGFSS YMQRPVLSAA TLTMCPSCER VATVENRSAH ITFPKPAGSS SSFSHFLQPS  360
AAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200TRKKLRL
2244252RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.11e-106homeobox-leucine zipper protein HAT4-like
TrEMBLA0A2K1KAR21e-104A0A2K1KAR2_PHYPA; Uncharacterized protein
STRINGPP1S42_217V6.11e-105(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.12e-62Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein