PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0208s0012.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 494aa    MW: 54435.8 Da    PI: 5.0477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0208s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.4e-11285327855
                           HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            Er+RR+++N+++ +Lr+++P  +      K++Ka+iL  A+ Y++sL+
  Sphfalx0208s0012.1.p 285 SERNRRKKLNQSLYRLRSVVPIiS------KMDKASILADAITYLQSLE 327
                           6*********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.811277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16281343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-14283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-14284337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-12284331No hitNo description
PfamPF000101.4E-8285327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.91E-6415484No hitNo description
Gene3DG3DSA:3.30.70.2605.4E-4416484No hitNo description
PROSITE profilePS516719.66417493IPR002912ACT domain
CDDcd048735.72E-4418483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MASRDGPREE IWESLTGVEQ SLRTSAANVP LPVQFGRDPM FAPQDFCTQQ LESPVLSSSP  60
VVLPIYSSGT NYVSGEILNI VLSTRESSRR RQAAGLQNRP LHPAVRNTIS KHNLCPLDAT  120
RDDQVCAPLP ALVTSCTESH GSEQIQSRNI QTQPDENKGF AAVQERISLR NATCKSLPGR  180
VEIQGSMCNQ FHTAAGIKLC QYQSSLHGSP PDHNMTARQL AESLEPQDCR QYPQGNHMGS  240
ERTQNNTGQD DIWESAMDQL EEHEEIEGGF EQILAGTFMS RNLVSERNRR KKLNQSLYRL  300
RSVVPIISKM DKASILADAI TYLQSLEEQL KMLEDDVVKD EKMISFLSVE KRSSNVVNGG  360
QSEDDEVNGG INGEYQGTAK DNIYCLNHKN QEPHAAVDHQ PHQSNQISVS ELEGMYNVQV  420
SCQRKPGSLL QLSKALDALG LNIIYSNITA INGSEQSTCT FIAQMTGRDA GSLENLEAQI  480
LEVTARFCFG PGC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280289RNLVSERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.12e-23bHLH family protein