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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sphfalx0199s0019.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family |
WRKY |
Protein Properties |
Length: 310aa MW: 34175.6 Da PI: 7.1749 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sphfalx0199s0019.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 97.5 | 9e-31 | 20 | 78 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+dD y+WrKYGqK vk+s++pr+YY+C++++Cpv+k+ver+a+dp +v +tYeg+H+h+
Sphfalx0199s0019.1.p 20 MDDDYKWRKYGQKAVKSSPYPRNYYKCSTHNCPVRKRVERCADDPGLVLTTYEGTHTHQ 78
58********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MKRVKQPKHC IKTRTDVDIM DDDYKWRKYG QKAVKSSPYP RNYYKCSTHN CPVRKRVERC 60 ADDPGLVLTT YEGTHTHQSP LLCRLPFGAY IGGFSHLSYM QPLLISPTGF NPPNLTTSNL 120 PLFGERLEST NTCNINSVGS LSRPMLLSQY SEACSNTCNS IATLGLIAPS YSTAYPLPGS 180 PQFGGDALVD PITLPSTQLS NQNQQLAEDA TIPNAQVEGP FLRMAPVRFA QAGTLQQSNN 240 NYNKFVEAQL QSTTTIGQGL VDSGEDHHGL MRLPASLWSE EVRANHISWT DEGLLEDMVR 300 PSIPTFGFT*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1wj2_A | 6e-26 | 11 | 80 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-26 | 11 | 80 | 8 | 77 | Probable WRKY transcription factor 4 |