PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0195s0035.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 641aa MW: 68598.9 Da PI: 7.8987

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0195s0035.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	476	523	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sphfalx0195s0035.2.p 476 SHSLAERVRREKISERMKFLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 523 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.69E-11	470	527	No hit	No description
SuperFamily	SSF47459	1.28E-16	470	539	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.656	472	522	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	472	538	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	476	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-9	478	528	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MTTAMAPSDH ASRLQSHGYI GVSAGASSSP SRRSTFLMAP ASSPVMSPLY SRSQLVSDSN 60 NKFTVEDSGV PSSSSSSFAK TILSHGNTPA SASCAVWQSL TSEMMPSYFN APGSETVSNI 120 DGIRRSAAAL LDHSPSLRNF DSHNNNNRPC SAFQNSQGSS SSPAELLSST SSAMGFGAWP 180 QRMPSDSNAM YFQASSMPDS MNPIPAATVP PAAALQEGRA AGLVTTSHHG LATNFSSDPG 240 FVERAAMKFS SLNSNTNSSS LQQTPYYTTC MGSSGPADSR VKPARGGRSI AAAAGDANVK 300 KLSRSSSSCC LTRLSAPVES KSMRQSPADE TKSQAVMRDD KNKLDQATHG VGDDTSVTIS 360 MQEAFEGATE IGTREGQSDQ RSAAALHGTE ETRLKRQRSG GESISIGREE DAKSLTTTDH 420 RSFNEKTSDY AAAEEADFSP AGGSLSRKES SSKPRPDPSK QDYIHVRARR GQATDSHSLA 480 ERVRREKISE RMKFLQDLVP GCNKITGKAV MLDEIINYVQ SLQRQVEFLS MKLASVNPRF 540 AFDDDHFLTK ENLLSSHAST APMLMMMMMD RPDSTTVLSY GHNQRPQQQQ QQQNHVHNLQ 600 QPIPGTSTSV AAAISAPLLF SGLDAFGDNL SQVKCQQQAR *

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MTTAMAPSDH ASRLQSHGYI GVSAGASSSP SRRSTFLMAP ASSPVMSPLY SRSQLVSDSN  60
NKFTVEDSGV PSSSSSSFAK TILSHGNTPA SASCAVWQSL TSEMMPSYFN APGSETVSNI  120
DGIRRSAAAL LDHSPSLRNF DSHNNNNRPC SAFQNSQGSS SSPAELLSST SSAMGFGAWP  180
QRMPSDSNAM YFQASSMPDS MNPIPAATVP PAAALQEGRA AGLVTTSHHG LATNFSSDPG  240
FVERAAMKFS SLNSNTNSSS LQQTPYYTTC MGSSGPADSR VKPARGGRSI AAAAGDANVK  300
KLSRSSSSCC LTRLSAPVES KSMRQSPADE TKSQAVMRDD KNKLDQATHG VGDDTSVTIS  360
MQEAFEGATE IGTREGQSDQ RSAAALHGTE ETRLKRQRSG GESISIGREE DAKSLTTTDH  420
RSFNEKTSDY AAAEEADFSP AGGSLSRKES SSKPRPDPSK QDYIHVRARR GQATDSHSLA  480
ERVRREKISE RMKFLQDLVP GCNKITGKAV MLDEIINYVQ SLQRQVEFLS MKLASVNPRF  540
AFDDDHFLTK ENLLSSHAST APMLMMMMMD RPDSTTVLSY GHNQRPQQQQ QQQNHVHNLQ  600
QPIPGTSTSV AAAISAPLLF SGLDAFGDNL SQVKCQQQAR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0195s0035.2.p