PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Sphfalx0192s0043.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 445aa MW: 51351.1 Da PI: 6.2906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0192s0043.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00092	58	77	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0192s0043.1.p 58 CSTCGPSFEDMAKYSSHLRK 77 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	3.3E-20	1	100	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	56	88	IPR007087	Zinc finger, C2H2
Pfam	PF13960	2.0E-31	259	360	IPR025452	Domain of unknown function DUF4218

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MVDELKTLWD GIWAYDGRKT TGGIPRVFKL RAICMWTMHD YPGFGFVSGL QTQGYKACST 60 CGPSFEDMAK YSSHLRKIVY LGHTKFLPLG HDMRSDPLLF SSFDMPYGDE RDIPEATTFA 120 YWRDVANRVI DLNDSMVFEG SGLTRWGILN SLPYWGELKI RHLLDPMHIE GNVGKAIIKQ 180 LYGEKDSNFR EACEDFERHP DVWIIVDPNT GYGANLQKAF GRDNDHKWPR YLKTHDYHRL 240 LQHILHVAII GLASAEIQDE LFVEEIPRLR VIAAEVVCKL EKAFPPSLFD CQVHLLVHLM 300 DEIAIAGPVH CRWMYWLERY MAVLKGYVCN HARVEGNMAA GHLAAESMFY CTNILATIDP 360 SCPHVWMEER EEEEDRLTGA IKTRMLLPIE LIQLTTFMLN NSNVMEEWRN FYENAKNMSG 420 RSRIFPTFHK YMKEKLVEVD QLLA*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MVDELKTLWD GIWAYDGRKT TGGIPRVFKL RAICMWTMHD YPGFGFVSGL QTQGYKACST  60
CGPSFEDMAK YSSHLRKIVY LGHTKFLPLG HDMRSDPLLF SSFDMPYGDE RDIPEATTFA  120
YWRDVANRVI DLNDSMVFEG SGLTRWGILN SLPYWGELKI RHLLDPMHIE GNVGKAIIKQ  180
LYGEKDSNFR EACEDFERHP DVWIIVDPNT GYGANLQKAF GRDNDHKWPR YLKTHDYHRL  240
LQHILHVAII GLASAEIQDE LFVEEIPRLR VIAAEVVCKL EKAFPPSLFD CQVHLLVHLM  300
DEIAIAGPVH CRWMYWLERY MAVLKGYVCN HARVEGNMAA GHLAAESMFY CTNILATIDP  360
SCPHVWMEER EEEEDRLTGA IKTRMLLPIE LIQLTTFMLN NSNVMEEWRN FYENAKNMSG  420
RSRIFPTFHK YMKEKLVEVD QLLA*

Link Out ? help Back to Top
Phytozome	Sphfalx0192s0043.1.p