PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0182s0027.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 665aa    MW: 72140.9 Da    PI: 5.5295
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0182s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.9e-073072440
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                          r C+ ++ +++ ++C  ++ +lC++C ++ H g       H++v
  Sphfalx0182s0027.1.p 30 RACDVCGIQRACWYCGADEAYLCAKCDTTVH-GanalalrHDRV 72
                          67*****************************.557888888776 PP
2CCT675e-23617660144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+a++lRYkeKr+tR+F+K+irYe+RK +Ae+RpR+KGrFvk++
  Sphfalx0182s0027.1.p 617 RQARVLRYKEKRRTRLFSKTIRYEVRKLNAERRPRMKGRFVKRT 660
                           99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.4E-52774IPR000315B-box-type zinc finger
PROSITE profilePS501199.9682774IPR000315B-box-type zinc finger
CDDcd000211.04E-43074No hitNo description
PROSITE profilePS5101715.735617659IPR010402CCT domain
PfamPF062032.3E-17617659IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MATKSKKMSS MPSSVQAATA AMAIAGRATR ACDVCGIQRA CWYCGADEAY LCAKCDTTVH  60
GANALALRHD RVRLAPHGTP VQKSFKRSSS VLSKHSSING DVRVLPSATS PSDHVLTERK  120
QQVLGALQTP ETTPLTVSDF LDFKAVLQVP QQSTRVREQA GGSFPARKRS RTSRPHPHHL  180
RRAPSHGGGE GAPRYKIQKS GSGSSKQDDA GMVQVKIESV MSDFMNGELQ ELMTLSNDDE  240
DEDAQQKRRR TIHGGAHEVP AFITVVQDGH ESPGLSAPAG FLEGHSRVSS DCFSPNAIFK  300
GKAAQAHAAQ EDRDLTCDDT DQFLVPDCFD NCAHFVDSGV DICCDVDGKI SLVEDDSTRT  360
VKEEEEGKDI ENFGTAFSGL KSDQLGADSG ASAEFESTDF GSTDFASPDF GPRDIMCDEF  420
GLDFDFPGSI SSESAFEGDS TAEDQFFLDQ AHGAAATNVA EATEFQNLYE HSATPGQQIL  480
ISSSGEPGAR SSPFAKFLPE VFVKLEGVYS GTERSKKEAQ EILRCSLESL SEEELRQVPS  540
LRLDYDDVLN AWSDRGAFWM PLDSQYNSAQ LLLLNPDVDS TAAGRMEVAG TGVEGGDHQR  600
RHDGSEGGGA AAAEVGRQAR VLRYKEKRRT RLFSKTIRYE VRKLNAERRP RMKGRFVKRT  660
SANS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-18B-box type zinc finger protein with CCT domain